Gene detail

Gene detail information of Glyur002233s00041112

Functional Annotation

Database	Orthologs	E value	Annotation
NR	AES71120.2	2.68E-89	DUF724 family protein [Medicago truncatula]
trEMBL	tr\|G7JB68\|G7JB68_MEDTR	1.00E-89	DUF724 family protein {ECO:0000313\|EMBL:AES71120.2}

Sequence

Transcript Sequence

>Glyur002233s00041112.1
GTTTCATCTTCAAAAGGAAAAGGAAAAACCTCACTCTCAGTCACTCACCAGAGAGACCGCGCGCAACAATGTCGGGTTTCTCCTCCGGAGCTTCCCCATCATTCTCTTTCGGATCCTCCCCATCATTCTCTTTCGGATCTGCTCCTACCTGGTCCTCTTCCTCCGCATCTTTCGCGACGTCGTTTTGTCTCGGCTCCTCTCGGTCCCTATTCTGCTCCTCCGCTTCCACCGCGCCCGNCAGCACCGCTTCTTCCCTTTTCGGTTCAGGCTCGCCCTTGTTGTTNTCCACATCCTCCTCTGCAACGACGCCGTTTGGCAGAGCACCGTCGTCGAAACCGTCAGCTTCGACGACGTCGTTAGGGGGATTCTCTTCTAATTCTTCAACGACTCTGTTTGGCAGAACAGCTTCTGCAACGACGCCATTTGGGGGAACCCCTTCTAATTCTTCAACGACTCCGTTTGGCAGAACAGCTTCTCCAACGACGCCATTTGGGGGAGCCTCTTCTTCAACGACGCCGTCTTCAGCATTTGCAAAGCCCTCTGCTCCAGCTAGTACTATAGCCGCAACGACGTCGTCTAGCTCTTCGGGATTCTCCTTCGGAATCCGTACTTCCTCAGTTTCTCAACCCTCTTTCGCGATCACCAATGCTGCTTCGGCTTCGGCTTCATCCGCCTCTGCAATTTCTAGCACACTGGGTTCATTCTCGTTCATCACGTCTTCGGCGCCGTTGTTCTCAACGGTGACGACCAACACGGCCTCAACACCGTTNTCTTCTGTGCCTGNGTTTGGTGCCACTGCTGCGGCGAGTGCTGGCTCCTCATCGGCTGCGGNGACTCCGGCCGCTTCGAGCGCTACTGCTCCTGCATTTGAAAAAATGGTTCAAGATTCAAGCTCTGGTAAAGCAAAGGATTTGGAAAATACTATTGCTGAATCTAAGCNGCAAACGACACAAGAAGACAACAATCTATCTCTTCTTACTGTCACCCCTTTTCCTGACACTGTTGGGGTGAAAGCAAAGGAAAATTCTGATGCGCCATCAAATTCGGCGTTGCCATTGATACTCATTTCGCGAGTTCTGAAGGGTATACCTCAGAGTCCCCACTTCTTCCATCTAAGAAGGTTCTCGGAGTTGGTGCGAGAGACGTTGGAGGCAGCATGGGATCAAGCATTTGAAGATACAGTGGAGCAAGTCCGTGAACTGAAGGCTAAGGATTTCTGGGACAAAGCCAGTGAGCTTTGGAAGACAATGGAAGACTTGCAGGGAATGGGGTACAATGTTGTTCCAATCAGAAGGAGGTTGGTGGAGATGGCAGAAGTGATGGCTGAGTTGAAGCAATCAAAGTGGGAGATTTTGAGGTTGAAAATCGAGGCTGAGAATCATAGGTTGGAAAGAAGCAGGCTTGAGAGTATTGTTCGGAGTCTCCAGCTGAGGGCTGAAAGGGAAGGAATGAACAGGGTGCGACTGCTTGGTGAGGTTGATCAAATGGAAAAGGAGTTACCGAAGTTTGATGCTTTAATAGCAAATTTAGCCATGAAACCATTTGATGTTGATGTTTGACTGAATAGTTTTTTTTTTTGTGTCATTATCAAAACTGATTGAAGGTTTAAGTGGTAATGGTCTAATGGATTTGATATATCCATCATGATGGTATTTTTGTTCTTTTCATCTTGGNTCCTAACAATTTTGGAGAAGAGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02233	6257	9334	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002233s00041112.1	PF05266.9	DUF724	335	476	6.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.688
SRR1783600	control	6.702
SRR1783602	moderate drought stress	6.612
SRR1811619	moderate drought stress	6.503

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.776
DRR006520	Root Summer glycyrrhizin high producing strain	10.939
DRR006521	Root Winter glycyrrhizin high producing strain	0.393
DRR006522	Root Winter glycyrrhizin high producing strain	0.320
DRR006523	Root Summer glycyrrhizin low producing strain	7.853
DRR006524	Root Summer glycyrrhizin low producing strain	8.112
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.364
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.325

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.378
SRR2868004	Drought Stress (root)	2.073
SRR2967015	Control (root)	2.032

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.063
SRR9715740	Leaf	0.829
SRR9715741	Leaf	2.546
SRR9715739	Root	17.231
SRR9715742	Root	6.919
SRR9715743	Root	11.483

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.558
SRR8749028	MeJA induced 9h	0.369
SRR8749029	MeJA induced 9h	0.663
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.033

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.115
SRR8400027	Control - Root	15.142