Gene detail information of Glyur002232s00037163.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G22620.2 | 5.00E-59 | Rhamnogalacturonate lyase family protein |
| NR | XP_003628875.1 | 3.79E-105 | Rhamnogalacturonate lyase [Medicago truncatula] |
| trEMBL | tr|G7LII5|G7LII5_MEDTR | 1.00E-105 | Rhamnogalacturonate lyase B-like protein {ECO:0000313|EMBL:AET03351.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02232 | 39851 | 43700 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | PL4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002232s00037163.1 | PF06045.6 | Rhamnogal_lyase | 44 | 76 | 6.50E-05 |
| Glyur002232s00037163.1 | PF14686.1 | fn3_3 | 205 | 275 | 3.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.572 |
| SRR1783600 | control | 0.346 |
| SRR1783602 | moderate drought stress | 0.428 |
| SRR1811619 | moderate drought stress | 0.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.043 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.044 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.523 |
| SRR2868004 | Drought Stress (root) | 0.348 |
| SRR2967015 | Control (root) | 0.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.056 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.030 |
| SRR9715739 | Root | 0.129 |
| SRR9715742 | Root | 0.228 |
| SRR9715743 | Root | 0.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.114 |
| SRR8749028 | MeJA induced 9h | 0.224 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.416 |
| SRR8749031 | Uninduced | 0.626 |
| SRR8749032 | Uninduced | 0.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.855 |
| SRR8400027 | Control - Root | 1.871 |