Gene detail

Gene detail information of Glyur002232s00037161

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53810.1	4.00E-04	Concanavalin A-like lectin protein kinase family protein
NR	XP_004509712.1	5.72E-25	PREDICTED: agglutinin-2-like [Cicer arietinum]
Swissprot	tr\|Q39527\|LECR_CLAKE	4.00E-14	Lectin-related protein (Precursor; Fragment)
trEMBL	tr\|Q2PP73\|Q2PP73_MEDTR	5.00E-23	Legume lectin beta domain protein {ECO:0000313\|EMBL:AET03338.1}

Sequence

Transcript Sequence

>Glyur002232s00037161.1
ATGTGGGGCCCTTTCTCGCAGGAACTGATCTGGGCTCTTGGCTACTTGTTGTTGAACATGGACCAGAAACAGCTTCACGTCGTTGCTTTGTACCAGAAGCAGCAGCTGCGAGTTCATCCTTATGGTGGTGCGACTTGGAGGGTGTTGTCGTTGTTTCAGGCTCGTCTTCGTTGTGTCTTTTGTGGGTGCTGTTTTGGTGGCTGCTGCCCTTCCCCTTTCCTTTGTGGGCTGGTTCGTGTTTTTGGCGCTCCCTCTTTCTGGCTGTTGGTGTTTGGCTCGCGATCTGTGGGTGTTGGCTCGCGATCTGCTCGGGTTGGTGAAGTTGTCTCCACCGCTACTTTGTCATCTTTGAGCATTGCGAGTGGGGCTGTCTTCAGACGGGTGCCTCTCTGCGGGTTGGCTCGTTTCTATGGGTCCACCGCCACCACTGCTCGGGTTGGAGGGGCTGGCTCCGCTGCTGCTGTATCAGCTCTAGTGCGTTGCAAGTTTGGCTGTCTTCGGACGGGTTCGGCATATGCTGCGTTTGTTGGCCAATCAGGATGGAACGACCTCATTCGCATCTACGACAATAGCAACGCTAAAGTCGCAGACTTTATTACNGAATTCACCTTCGTGGTGAACAGAAAGGGTAAAAAAGACCACGGTGATGGATTCGCCTTCTTTATTGTCTCACCAGATTTTAACTTCCCAAACGCAACGGAATCAGAGGGTGGGTTCCTTGGAATGTTCACCCCTGAAACTGCTTTCAGATCCAATAAGCAACAGGTGTTGGTTACTTATTCTATGAATGGGCAACCGAATTTTGGGGATTCGAGCAGCTTGGTGTATGGTATTGATCTGACGAGTATTCTGCCAGAAAAAGTTTTTATTGTCTTCTCTGCCGCCACTGGTGACTTGGTTGAGACACATGACATTAATTCGTTCCTGGTCTTTCACTTCAAACTTGTAAAGACATATGCAAGGAGTGGAGTTGCTATATATGCTATACACATGAATGCCAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02232	16668	20220	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002232s00037161.1	PF00139.14	Lectin_legB	174	259	3.10E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.222
SRR1783600	control	5.665
SRR1783602	moderate drought stress	5.022
SRR1811619	moderate drought stress	4.746

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.038
DRR006520	Root Summer glycyrrhizin high producing strain	0.085
DRR006521	Root Winter glycyrrhizin high producing strain	0.204
DRR006522	Root Winter glycyrrhizin high producing strain	0.115
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.220
SRR2868004	Drought Stress (root)	0.137
SRR2967015	Control (root)	0.087

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.174
SRR9715740	Leaf	0.125
SRR9715741	Leaf	3.252
SRR9715739	Root	0.067
SRR9715742	Root	17.041
SRR9715743	Root	12.964

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.059
SRR8749028	MeJA induced 9h	0.185
SRR8749029	MeJA induced 9h	0.087
SRR8749030	Uninduced	0.031
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.013

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.885
SRR8400027	Control - Root	10.783