Gene detail

Gene detail information of Glyur002224s00035124

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G05642.1	1.00E-07	Nucleic acid-binding, OB-fold-like protein
NR	AES87871.2	3.30E-75	replication factor-A carboxy-terminal domain protein [Medicago truncatula]
trEMBL	tr\|G7JRF3\|G7JRF3_MEDTR	1.00E-75	Replication factor-A carboxy-terminal domain protein {ECO:0000313\|EMBL:AES87871.2}

Sequence

Transcript Sequence

>Glyur002224s00035124.1
ATGGCAATGGCAATGGCAATGGCGAGTGGAGTGAGTCTCATTTCTGAGATTTCCCATGCAAAGGAAAACTGGAACATATTAGCAAAAATTGTTCGCCTCTGGCTTGGTAAGAGGATTCATGCATCAGTGAGGAGGACTTTGGTGTATAAGTTTGAGAAACTGTTGAAGGAGGGTAGTGTTTATTCGATTCAGTTCCTGTCAGTTGCTACTAATGTGGCGGCATATAAAACCTGTCGACATTCCCACAAGCTGATTTTCCAGATCTCCACTAAGGTCCAAATACTTGACACTGGTCGTGTGGTTGGTCATGGATATGAGTTGGTTCCAATTCCACAGATAACTGCTGCAGGTTTTGATTCTGATTTCTTGGTTGATGTTATTGGAGTGATTACTAGAGTTGGAAGTGAGAGGCAGTATGAGAGGAATGGAACCAAGACTAAGCTGAATGTTATCAGTTTAGAGGCTGCTGGACATAAGATTGAGTGCACTCTGTTTGGTGAATATGTTGATGAGTTCAACACATTTCTTGCTTCTGGAGAGATTGATAATGTTGTTGTCATTATTCAATATGCAAAGGCTGCTGTTGAAGTTAAGAAAAGCTTGACTGCATCAATGGAATCACCAAGCCAAGGGTTGAGTCAGTTGAAAGAAACTGCCAAAATTTCATTGGAAGAAGAGTTTCTTGAGTTGACACCAAGGAACACTATTCTTGGTTTGAATAGTCAGAAAGAGGTTCGAGTCCATGATGGAACTGGAAATGCCATCTTTGTGATATTTGATCGAGATGGAGCTTTCCTGTTCAACAAAACTGCTGCTGAGTTGTTTGAAATAGAGGATAAGGTTTCAGGGAATCATGCAATTCCTAAAGAAATGCTTGACCTGGTCGGCAAGTCCTACCTGTTCAAGTTTGAGCAATCTTTCAGGGTTAAGAAGATTTGCGTTGATGAAGCAATCATTAACAAGTTCAAGGATGGTGGTTGTCAGAGTTGTTGTGTTACTATAGGAAAGGGAAAGGAATCAGTCACAGAAAATTCTTCCATTGACATTTCTCAGGACCTTATGCCCAAGTTTACATATGCTGCTGTTCAGGGATCCTCTCAAATTGAAAGCGAAGTTGTTGGAGAGGAATCATCTCAGATGTCCAATGACAACAACGTGACCCCTGCCAAGAAGGATCCCATATTTGTAGATCTGGAAATTACTCCTCCCATGTCGGTTTCTGCAAGTTCTGCATCTTCAAGTCAGTTACCCATTGATCTGTCCAATGATTTCGACAATTTGACTCCCTTGAAGAGAGAATCGCTGATTGAAACCAGCACTGATGCTGACCTCCATGCTTCTCTGAAGATGTTGAAGAAGAACATAAAGATTGAGAAGGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02224	36343	39422	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002224s00035124.1	PF02721.9	DUF223	36	116	3.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.832
SRR1783600	control	12.901
SRR1783602	moderate drought stress	16.909
SRR1811619	moderate drought stress	16.731

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.169
DRR006520	Root Summer glycyrrhizin high producing strain	10.351
DRR006521	Root Winter glycyrrhizin high producing strain	8.331
DRR006522	Root Winter glycyrrhizin high producing strain	8.674
DRR006523	Root Summer glycyrrhizin low producing strain	8.065
DRR006524	Root Summer glycyrrhizin low producing strain	8.166
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.825
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.123

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.353
SRR2868004	Drought Stress (root)	26.654
SRR2967015	Control (root)	30.869

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.264
SRR9715740	Leaf	5.975
SRR9715741	Leaf	14.817
SRR9715739	Root	2.252
SRR9715742	Root	8.995
SRR9715743	Root	6.553

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.650
SRR8749028	MeJA induced 9h	27.787
SRR8749029	MeJA induced 9h	17.819
SRR8749030	Uninduced	17.098
SRR8749031	Uninduced	11.498
SRR8749032	Uninduced	10.775

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.354
SRR8400027	Control - Root	29.631