Gene detail information of Glyur002224s00035120 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22930.1 | 3.00E-46 | calmodulin-like 11 |
| NR | XP_004497995.1 | 1.53E-66 | PREDICTED: calmodulin-like protein 11-like [Cicer arietinum] |
| COG | YP_001866396.1 | 2.00E-14 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9LIK5|CML11_ARATH | 1.00E-57 | Calmodulin-like protein 11 |
| trEMBL | tr|I1JB53|I1JB53_SOYBN | 1.00E-64 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G00450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02224 | 18582 | 20483 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002224s00035120.1 | PF13405.1 | EF-hand_6 | 12 | 41 | 0.00023 |
| Glyur002224s00035120.1 | PF13499.1 | EF-hand_7 | 53 | 113 | 4.90E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.124 |
| SRR1783600 | control | 0.202 |
| SRR1783602 | moderate drought stress | 0.031 |
| SRR1811619 | moderate drought stress | 0.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.176 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.128 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.784 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.907 |
| SRR2868004 | Drought Stress (root) | 20.605 |
| SRR2967015 | Control (root) | 8.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 74.839 |
| SRR9715740 | Leaf | 25.971 |
| SRR9715741 | Leaf | 39.750 |
| SRR9715739 | Root | 0.106 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.906 |
| SRR8749028 | MeJA induced 9h | 4.790 |
| SRR8749029 | MeJA induced 9h | 13.559 |
| SRR8749030 | Uninduced | 43.713 |
| SRR8749031 | Uninduced | 15.286 |
| SRR8749032 | Uninduced | 2.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.111 |
| SRR8400027 | Control - Root | 5.289 |