Gene detail

Gene detail information of Glyur002222s00037905.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08850.1	0	Leucine-rich repeat receptor-like protein kinase family protein
NR	XP_004492928.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Cicer arietinum]
COG	YP_004775215.1	5.00E-62	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|G7KU89\|G7KU89_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES80539.1}

Sequence

Transcript Sequence

>Glyur002222s00037905.1
ATGGTACCCATGTATGAAAACGTAAAATTCATCGAGAGTCTAGCGTGGTGGAGGATTCTCTTCATATTCCTTTGGATCCTTCTGCCACCCTCTTTGCTTCAAGTTGCTGGTTTTTCCAAAACCGCTTCTTTGAGTTTGACCCATGCTGCCACAATTACTACTGTTCATGATCAAGCTGCAGCTGAAGACAGGGAAGCAAATGCTCTGTTGAAGTGGAAAAACAGCCTTGACAATCACAGCCAAGCTCTCTTGTCAACTTGGACAGGTTCTAGTCCATGCAAATGGCAAGGAATTCAGTGTGACAAATCCAAGTCCATCTCCAGCATAAACCTTGCAAATTATGGACTAAAAGGTACACTCCACAATCTCAGCTTCTCCTCATTCCCCAACCTCTTCAGCATAGATATCTACAACAACTCCTTTTATGGGACCATTCCCCCACAAATTGGCAACATGTCCAAAGCAAATGTTTTTAACTTTTCTTCAAATTCTTTTGATGGTCCCATCCCAAAAGAGTTGTGGACATTAAGGAGTTTACAGAAACTTGACCTCTCCTTGTGTCATCAACTAAGTGGAGAGATTCCTAGTTCCATAGCAAATTTGTCCAACCTATCATATCTGGATTTAGGTGACAGCAAATTTTCTGGCCACATTCCTCCAGAGATTGGGAAATTGAACAACTTGAGGTATCTAAGTATCGGAAATAATAGCCTTATTGGTTCCATTCCTCAAGAAATTGGAATGTTGGCAAACCTTCGTGTTATTGATTTGTCACGGAACTCTCTACGCGGTACTATCCCAAGTACAATAGGTAACATGAGCAACTTAAATGAACTTTACCTTTCTAATAACACCCGGTTGTCTGGACCAATCCCTCCCTCCTTGTGGAACTTGTCTAACTTGTCCTTGCTCTACCTTGATAACAATAATTTTTCTGGATCAATCCCTGCTTCCATTGAAAACTTGGTCAATTTGAATGAACTTGCACTTGATAAAAATAACCTTCATGGACCTATTCCTTCCACCATTGGGAACTTGACAAAGCTCCGGTGGTTGTTCATGGGCGTCAATTATTTTTCTGGATCAATTCCTCCTTCCATTGGAAATCTAATCAATTTGGATATCCTCAGTCTCCTAGGAAACGATCTCTATGGATCAATTCCTGTCACAATTGGAAATTTGACAAGGCTCACTGTCTTGGAATTATCCATTAACAAACTTAATGGTAGCATTCCACAGGTCCTGAATAACATGACATTCTTGTATTCCTTGTCATTAGACGGGAATGATTTCATTGGCTATATACCTCCTCAAATATGCTCTGGCGGGTCACTAGCAAACTTAAATGCTCAGGGAAACCACTTCACTGGCCCTGTACCACCAAGCTTGAAAAACTGCTCTAGCATTGCAACGCTCACGCTTTTTATAAATCAAATAGGAGGGGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATCTGGGTGAAAATAAATTTTATGGCCACATTTCACCAAACTGGGGGAAGTGTCCTAATCTTGATACCTTCATCATATCCAACAATAATATTTCCGGCGATATACCAGTGGAACTTGTTGCAGCAACCAAGCTAGGTAGGCTTCATCTTTCTTCGAATCACCTGACTGGGAAGCTTCCAAAGGAACTAGGAAACATGAAATCATTACTTGACGTTAAGATCAGCAACAATCATCTTTCAGGAAACATTCCAACTGAAATTGGATTATTACAAAATCTTGAAGAGCTGGATCTCGGAGGAAACATGTTGAGTGGCACAATTCCAAAACAAGTTGTCATGTTACCCAAGTTACGGAACTTGAATTTGAGCAAAAACAAATTCAAGGGAAGCATTCCCGCGGAGTTTCGCCTATCACAACCTCTTGAATCTCTTGACCTTAGCTGGAATTTGTTGAGTGGAGCAATACCAACAATGCTTGGAGAGTTGAAGCTATTGCAATGGCTCGATCTATCATGCAATAATCTCTCTGGAACCATTCCATCCAGTTTTGATGGCGGCAATGGCATGTCAAGCTTGACTTTTGTCAACATATCATACAACCAGCTAGAAGGGAAGCTTCCAAATAATAAAGCCTTTCTTAACGCTTCAATTGAATCATTAAAGAATAACAAAGGCTTGTGTGGTAATCACACTGGCTTAGTGCTTTGCCCAACCAACCAAAGAAAGAAGAGCCACAAGGTCATCCTACTAGTATTGTTTGTCGTCATAGGTGCTCTATTACTAGTACTTTGTGGGGTGGGAGTTTCAATGTATATTCTTTGCTGGAGTGCAAGAAAGAAAGAAAATGAGGATAAAGATTCTAAAGAAGCACAATCAGAAGAAGTCTTTTCCATATGGAGTCACGATGGAAAAATGGTGTTTGAAAACATCATTGAAGCTACCAATAATTTTGATGACAAATATCTCATTGGAGTGGGAGGGGAAGGATCCGTTTACAGGGCCAAGTTAGCTTCAGATCTGGTTGTTGCTGTGAAGAAACTTCATTTGGGAACAGATGGAGAGAGGCCCAATTTCAAAGCTTTTGAAAATGAAATTCAAGCTTTGACAGAAATCAAGCATCGTAACATTATAAAGCTCTATGGATTTTGCTCACACTCGCGATTCTCATTTCTTGTTTACAAGTTCTTTGAAGGGGGAAATTTGGCTCAAATGCTCAACAATGACACAGCAGCAATTGAGTTTGATTGGAAAAGGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTATATGCATCATGACTGCTTACCTCCAATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTTTGGATTTAGAATATGAAGCTCATGTTTCTGATTTTGGAACAGCCAAGTTTCTGAAGCCTGATTCACAGACTTGGACAGCATTTGCAGGCACCTTTGGGTATGCAGCTCCAGAGCTTGCCCAGACCATGCAAGTGAACGAGAAATGTGATGTTTTCAGCTTTGGAGTACTTTGTTTTGAAATCCTAATGGGAAAGCATCCAGCAGATCTCATTTCTTCGTTGTTGTNACCATCTACCGCAAAGATGACTTATAACTTGCTGTTGATTGATGTGTTAGACCAACGCCCTCCTCCACCCAACAATTCAATTGCAGGGGATGTCATCTTGATTGCAAGGTTGGCATTGTCTTGCTTGAGTGAAAGTCCATCTTCTCGCCCAACCATGGATCAAGTATCCAAAGAACTTTTCATGAGAAAATCACCTTTAGCAGACCAGTTCCCTGTCATCAAACTTGGACAACTCCACTAGCACATGGAAACTACTTAAGTATTTTGTTTTCTTTGCACGTCATCTATCATATTATGTTAAGCCTTTTTTTCTTCTTGGTAATTGTAACTGTATATGAGTGAGATAAGGCTTGGTTGTGGTTGTTGTTGTTGTTGGAACTGTATATGTCATGTGTTCAAGTTAGCAGTTCACTTTTGTGGTCAATCCTTAGTGGTGTA

Protein Sequence

>Glyur002222s00037905.1
MVPMYENVKFIESLAWWRILFIFLWILLPPSLLQVAGFSKTASLSLTHAATITTVHDQAAAEDREANALLKWKNSLDNHSQALLSTWTGSSPCKWQGIQCDKSKSISSINLANYGLKGTLHNLSFSSFPNLFSIDIYNNSFYGTIPPQIGNMSKANVFNFSSNSFDGPIPKELWTLRSLQKLDLSLCHQLSGEIPSSIANLSNLSYLDLGDSKFSGHIPPEIGKLNNLRYLSIGNNSLIGSIPQEIGMLANLRVIDLSRNSLRGTIPSTIGNMSNLNELYLSNNTRLSGPIPPSLWNLSNLSLLYLDNNNFSGSIPASIENLVNLNELALDKNNLHGPIPSTIGNLTKLRWLFMGVNYFSGSIPPSIGNLINLDILSLLGNDLYGSIPVTIGNLTRLTVLELSINKLNGSIPQVLNNMTFLYSLSLDGNDFIGYIPPQICSGGSLANLNAQGNHFTGPVPPSLKNCSSIATLTLFINQIGGDIAQDFGVYPNLEYIDLGENKFYGHISPNWGKCPNLDTFIISNNNISGDIPVELVAATKLGRLHLSSNHLTGKLPKELGNMKSLLDVKISNNHLSGNIPTEIGLLQNLEELDLGGNMLSGTIPKQVVMLPKLRNLNLSKNKFKGSIPAEFRLSQPLESLDLSWNLLSGAIPTMLGELKLLQWLDLSCNNLSGTIPSSFDGGNGMSSLTFVNISYNQLEGKLPNNKAFLNASIESLKNNKGLCGNHTGLVLCPTNQRKKSHKVILLVLFVVIGALLLVLCGVGVSMYILCWSARKKENEDKDSKEAQSEEVFSIWSHDGKMVFENIIEATNNFDDKYLIGVGGEGSVYRAKLASDLVVAVKKLHLGTDGERPNFKAFENEIQALTEIKHRNIIKLYGFCSHSRFSFLVYKFFEGGNLAQMLNNDTAAIEFDWKRRVNVVKGVANALSYMHHDCLPPIVHRDISSKNVLLDLEYEAHVSDFGTAKFLKPDSQTWTAFAGTFGYAAPELAQTMQVNEKCDVFSFGVLCFEILMGKHPADLISSLLXPSTAKMTYNLLLIDVLDQRPPPPNNSIAGDVILIARLALSCLSESPSSRPTMDQVSKELFMRKSPLADQFPVIKLGQLH

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02222	38012	41709	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002222s00037905.1	PF08263.7	LRRNT_2	64	101	5.80E-08
Glyur002222s00037905.1	PF00560.28	LRR_1	178	201	0.41
Glyur002222s00037905.1	PF13855.1	LRR_8	251	311	1.50E-08
Glyur002222s00037905.1	PF13516.1	LRR_6	514	535	1
Glyur002222s00037905.1	PF00560.28	LRR_1	588	605	0.34
Glyur002222s00037905.1	PF13855.1	LRR_8	637	698	2.50E-07
Glyur002222s00037905.1	PF00069.20	Pkinase	818	1084	7.60E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.229
SRR1783600	control	13.061
SRR1783602	moderate drought stress	17.279
SRR1811619	moderate drought stress	16.649

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.087
DRR006520	Root Summer glycyrrhizin high producing strain	5.004
DRR006521	Root Winter glycyrrhizin high producing strain	0.317
DRR006522	Root Winter glycyrrhizin high producing strain	0.279
DRR006523	Root Summer glycyrrhizin low producing strain	2.908
DRR006524	Root Summer glycyrrhizin low producing strain	2.486
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.413
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.367

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.039
SRR2868004	Drought Stress (root)	8.292
SRR2967015	Control (root)	8.297

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.393
SRR9715740	Leaf	2.167
SRR9715741	Leaf	3.759
SRR9715739	Root	2.367
SRR9715742	Root	8.406
SRR9715743	Root	7.537

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.017
SRR8749030	Uninduced	0.009
SRR8749031	Uninduced	0.011
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.324
SRR8400027	Control - Root	7.576