Gene detail information of Glyur002221s00037510.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G64190.106-phosphogluconate dehydrogenase family protein
NRKEH21177.10decarboxylating-like 6-phosphogluconate dehydrogenase [Medicago truncatula]
COGYP_001869525.106-phosphogluconate dehydrogenase [Nostoc punctiforme PCC 73102]
Swissprottr|Q9SH69|6PGD1_ARATH06-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic
trEMBLtr|A0A072TUR1|A0A072TUR1_MEDTR06-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold022212372325216-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K00033PGD, gnd, gntZEC:1.1.1.44 1.1.1.343Carbon metabolismmap01200
Pentose phosphate pathwaymap00030
Glutathione metabolismmap00480


Gene Ontology

biological_process

GO:0006098  pentose-phosphate shunt

GO:0055114  oxidation-reduction process


molecular_function

GO:0004616  phosphogluconate dehydrogenase (decarboxylating) activity

GO:0016491  oxidoreductase activity

GO:0050661  NADP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002221s00037510.1PF03446.10NAD_binding_281808.80E-48
Glyur002221s00037510.1PF00393.146PGD1854832.70E-128


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control92.575
SRR1783600control92.008
SRR1783602moderate drought stress94.666
SRR1811619moderate drought stress92.570

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain92.223
DRR006520Root Summer glycyrrhizin high producing strain92.099
DRR006521Root Winter glycyrrhizin high producing strain82.113
DRR006522Root Winter glycyrrhizin high producing strain79.144
DRR006523Root Summer glycyrrhizin low producing strain113.244
DRR006524Root Summer glycyrrhizin low producing strain111.727
DRR006525Leaf Summer glycyrrhizin high producing strain87.709
DRR006526Leaf Summer glycyrrhizin high producing strain87.048

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)220.116
SRR2868004Drought Stress (root)164.233
SRR2967015Control (root)156.479

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf83.204
SRR9715740Leaf101.126
SRR9715741Leaf101.575
SRR9715739Root185.340
SRR9715742Root156.039
SRR9715743Root149.416

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.722
SRR8749028MeJA induced 9h64.608
SRR8749029MeJA induced 9h44.847
SRR8749030Uninduced80.137
SRR8749031Uninduced61.907
SRR8749032Uninduced56.197

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root156.298
SRR8400027Control - Root143.130

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved