Gene detail information of Glyur002220s00035920 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46800.1 | 4.00E-136 | Mitochondrial substrate carrier family protein |
| NR | XP_004509724.1 | 0 | PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein-like [Cicer arietinum] |
| Swissprot | tr|Q93XM7|MCAT_ARATH | 3.00E-171 | Mitochondrial carnitine/acylcarnitine carrier-like protein |
| trEMBL | tr|C6TA29|C6TA29_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G13170.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02220 | 15267 | 19585 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002220s00035920.1 | PF00153.22 | Mito_carr | 4 | 95 | 7.90E-18 |
| Glyur002220s00035920.1 | PF00153.22 | Mito_carr | 103 | 199 | 3.20E-21 |
| Glyur002220s00035920.1 | PF00153.22 | Mito_carr | 214 | 296 | 5.00E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.161 |
| SRR1783600 | control | 6.814 |
| SRR1783602 | moderate drought stress | 4.740 |
| SRR1811619 | moderate drought stress | 4.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.711 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.346 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.165 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.367 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.100 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 146.939 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 145.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.245 |
| SRR2868004 | Drought Stress (root) | 9.813 |
| SRR2967015 | Control (root) | 6.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 146.554 |
| SRR9715740 | Leaf | 184.566 |
| SRR9715741 | Leaf | 109.140 |
| SRR9715739 | Root | 11.325 |
| SRR9715742 | Root | 7.800 |
| SRR9715743 | Root | 8.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.655 |
| SRR8749028 | MeJA induced 9h | 4.115 |
| SRR8749029 | MeJA induced 9h | 4.302 |
| SRR8749030 | Uninduced | 0.983 |
| SRR8749031 | Uninduced | 0.233 |
| SRR8749032 | Uninduced | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.907 |
| SRR8400027 | Control - Root | 11.939 |