Gene detail information of Glyur002219s00033069 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14620.1 | 2.00E-163 | domains rearranged methyltransferase 2 |
| NR | XP_003524549.1 | 0 | PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Glycine max] |
| COG | YP_006434397.1 | 1.00E-08 | DNA-methyltransferase Dcm [Flexibacter litoralis DSM 6794] |
| Swissprot | tr|Q9M548|DRM2_ARATH | 0 | DNA (cytosine-5)-methyltransferase DRM2 |
| trEMBL | tr|I1K1I2|I1K1I2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G08740.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02219 | 24070 | 31435 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002219s00033069.1 | PF00145.12 | DNA_methylase | 460 | 574 | 2.90E-12 |
| Glyur002219s00033069.2 | PF00145.12 | DNA_methylase | 460 | 574 | 2.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.285 |
| SRR1783600 | control | 12.497 |
| SRR1783602 | moderate drought stress | 10.230 |
| SRR1811619 | moderate drought stress | 10.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.188 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.164 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.474 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.291 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.776 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.545 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.011 |
| SRR2868004 | Drought Stress (root) | 33.002 |
| SRR2967015 | Control (root) | 31.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.561 |
| SRR9715740 | Leaf | 18.607 |
| SRR9715741 | Leaf | 19.265 |
| SRR9715739 | Root | 4.973 |
| SRR9715742 | Root | 12.529 |
| SRR9715743 | Root | 10.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.194 |
| SRR8749028 | MeJA induced 9h | 17.159 |
| SRR8749029 | MeJA induced 9h | 15.016 |
| SRR8749030 | Uninduced | 13.762 |
| SRR8749031 | Uninduced | 8.102 |
| SRR8749032 | Uninduced | 8.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.716 |
| SRR8400027 | Control - Root | 28.967 |