Gene detail

Gene detail information of Glyur002219s00033067

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10630.1	1.00E-103	ADP-ribosylation factor A1F
NR	XP_004304633.1	2.85E-131	PREDICTED: ADP-ribosylation factor 1-like isoform 1 [Fragaria vesca subsp. vesca]
COG	YP_001737337.1	8.00E-35	small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|Q06396\|ARF1_ORYSJ	9.00E-133	ADP-ribosylation factor 1
trEMBL	tr\|G9HPX7\|G9HPX7_ARAHY	2.00E-131	ADP-ribosylation factor {ECO:0000313\|EMBL:AEV66152.1}

Sequence

Transcript Sequence

>Glyur002219s00033067.1
AAGAGAAACAGCGTTCTTCCTCTCTGATTCTGATTAAAGGAAGAAAAAATCGCGATTCGCTCTTCTCTTCGAAAACCTCGACATCGAGAAGAGCAAGTGGTGTGAGTGAAGATGGGGTTAACGTTCACGAAGCTGTTCAGCAGGCTATTCGCGAAGAAGGAAATGAGGATTCTGATGGTTGGTCTCGATGCTGCTGGTAAGACCACCATACTCTACAAGCTCAAGCTCGGAGAAATCGTCACCACCATCCCTACCATTGGATTTAATGTTGAAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGGGGTCAGGACAAGATCCGTCCACTGTGGAGGCACTACTTCCAGAACACTCAGGGTCTTATTTTTGTGGTTGATAGCAATGATAGAGATCGAGTGGTAGAAGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAACAAGATCTTCCCAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGCCAACGCCACTGGTATATCCAGAGCACTTGTGCAACTTCTGGAGAGGGTCTCTACGAGGGTCTGGACTGGCTTTCTAACAACATTGCCACCAAGGCATGAGACATTTGAAAAAATTTGGTGTGGTCTGATCCTTTAATGCCGAGTCCGTTGGTTCTTGAAGAAGGATGCTTTTCCTTTCAAGTGAATGTTGTAATAGCAGAATGGTTGTTAGAAATATTTTCCTCTTTTTGTAACTTGGGTTTGTATGATTGCTTAAATCAGCTAATACTTTTAGCTATAATTGGAACTCTTGAATTTCCTTTAGAGTGCCTTGTTCATTTTTATTTTGTCAGTTTGATTATCGGTTGAATATTTCCATTGGTTATGTTCTTGGAGTATTACTGGTAATGATATTGTCTAGCGATTGGTGAAGCAGAATAGGAAATATACAGATATTATTTATCATAGATTCAATGTAAACCATATCTTGTAACAGTATCATTCAACAAAGAATCAGCAAGTTCCTTAGTATGAGGTGTCTAACAAAACAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02219	7222	11505	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002219s00033067.1	PF00025.16	Arf	5	177	3.00E-80
Glyur002219s00033067.2	PF00025.16	Arf	5	177	4.00E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	625.424
SRR1783600	control	625.077
SRR1783602	moderate drought stress	760.218
SRR1811619	moderate drought stress	762.157

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1238.772
DRR006520	Root Summer glycyrrhizin high producing strain	1217.624
DRR006521	Root Winter glycyrrhizin high producing strain	1209.341
DRR006522	Root Winter glycyrrhizin high producing strain	1178.479
DRR006523	Root Summer glycyrrhizin low producing strain	1905.425
DRR006524	Root Summer glycyrrhizin low producing strain	1891.371
DRR006525	Leaf Summer glycyrrhizin high producing strain	156.021
DRR006526	Leaf Summer glycyrrhizin high producing strain	155.748

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	851.248
SRR2868004	Drought Stress (root)	807.261
SRR2967015	Control (root)	854.138

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	267.035
SRR9715740	Leaf	317.421
SRR9715741	Leaf	391.693
SRR9715739	Root	1567.781
SRR9715742	Root	1038.659
SRR9715743	Root	1131.432

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	361.182
SRR8749028	MeJA induced 9h	305.766
SRR8749029	MeJA induced 9h	321.919
SRR8749030	Uninduced	328.115
SRR8749031	Uninduced	294.747
SRR8749032	Uninduced	405.760

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	696.301
SRR8400027	Control - Root	656.647