Gene detail

Gene detail information of Glyur002213s00037359

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26310.1	1.00E-31	K-box region and MADS-box transcription factor family protein
NR	NP_001241059.1	3.31E-95	agamous-like MADS-box protein AGL3-like [Glycine max]
Swissprot	tr\|Q9SBH1\|CAL_ARATH	2.00E-37	Transcription factor CAULIFLOWER
trEMBL	tr\|G3E7M7\|G3E7M7_SOYBN	1.00E-95	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G11110.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02213	21581	35466	-

Gene family

Gene family	subfamily
Transcription Factors Family	MIKC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0046983 protein dimerization activity

"

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002213s00037359.1	PF00319.13	SRF-TF	9	59	3.50E-26
Glyur002213s00037359.1	PF01486.12	K-box	103	160	5.50E-10

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.560
SRR1783600	control	0.578
SRR1783602	moderate drought stress	0.546
SRR1811619	moderate drought stress	0.397

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.542
DRR006520	Root Summer glycyrrhizin high producing strain	6.872
DRR006521	Root Winter glycyrrhizin high producing strain	0.664
DRR006522	Root Winter glycyrrhizin high producing strain	0.743
DRR006523	Root Summer glycyrrhizin low producing strain	1.063
DRR006524	Root Summer glycyrrhizin low producing strain	1.066
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.101
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.100
SRR2868004	Drought Stress (root)	0.041
SRR2967015	Control (root)	0.000

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.697
SRR9715740	Leaf	1.406
SRR9715741	Leaf	0.840
SRR9715739	Root	0.486
SRR9715742	Root	4.399
SRR9715743	Root	5.855

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.038
SRR8749030	Uninduced	0.082
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.897
SRR8400027	Control - Root	2.159