Gene detail

Gene detail information of Glyur002209s00037927

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26330.2	2.00E-93	DNA binding
NR	XP_004509752.1	0	PREDICTED: uncharacterized protein LOC101515165 [Cicer arietinum]
trEMBL	tr\|G7LGX2\|G7LGX2_MEDTR	0	F/Y rich carboxy-terminal protein {ECO:0000313\|EMBL:AET03221.2}

Sequence

Transcript Sequence

>Glyur002209s00037927.1
ATGGCGAAGACTAGAACCGCTGGGAAATCCACACGAGCAGACGCGGAACAGAAAAGTACCGATGGCCTCGAAATCATCTCCATCGGTTCTCTCTACAATGGACAATGGGACAAGAAGTACTGGAGCAGCTCTAGGGGAAAAGATCGATATCCATATCCAGTTGGTTACCGAGCTGTTAGAGCTCATAATGGGACCACTTATAAGATGGAAATTCTTGAAGGTGTTAATGGGCCTAAATTTTTGATTACTTCTGATGATGGGAATTCGTCTTCTGGGAAAACTCCAGACTCTGCATGGGAGGAATTTCANAAGAAAGGTTGCCCCCGCGTGAAAATTTGGCATGGGAAGAGACTTTCNTCTAAGATGGATGGCTTAGAGCTTTTTGGGTTCAAAAATCCATTCATTCAGAGGTTGCTTCGGGAACTGGTGACAGATATAAATGGAATAGCAGAAAGGAGTTTGGTACCCTCAAACTTCTGTAATGAGGTTTCTAGAACAGAGCATGATGATTGCCACCCAAATGTAGGCACACATCCTGATTTATTACTTTGCNTGGGAAGATCACGTGTTACAGGGAAGAGAAGTAGATCTGAACCTAAAANTAAGAAGTTAAATGGGGGATCTAGACCTCGATCTCTAGAACTCACATGTAGTAGAGCTTCAGATGTAAAGAATGAGAAGACCCTTGGTCAGGGGAGTTCTACAACCCACAATGGTTCAGAAGAAGAGAATGGGGCCCACAATCAAATAGGTGTGTCACCTTCATTACAAATAATGTCCTCTGTTGGTAAAAGAAGTAATTGCATTTCATCCAAAANGGAGCTGCCATTGAATCCTATTGACATCTCTGAGGATAAAAATGTGGGAGCTGTACCTTCGGAGAGACTGACTGAGTTTCTCTACTCTGCAAATTGCAAAACTACAGAAATAACTGAAAACTTGTCCACAGAAAAACCTCTTCATAGGTCACACGATGTGGAGTTGAAAATGTCTAGTTTGTTGGTGACAGCAGAAGACAAGAAACTGATGCAGTCATATTCCAAAGAGTCTCAGGGTTGTATTGGCATTGATCTTTGTGCTCCTGATACCCTAGATTTAATGCAAGAAAATACCTCTGATTCTGCACCAAATAAACTGGATAAAAATGCTTACGGTGAGCCAGCATGTGAGGGCACCCCTGAAGATTTGTTAAATACAGAACATGATAAAGTGCTCAGATCTAATTCAAATCCAAGCTCTGAGAAAAGTGATTTTAATTCAGCTGGCCAGGATGTGGCGGAGTCAATGATGTCACTTCTGCTTCCTCAAGCAGTTCCTTTGCTGAGGAATGTCTCAACAGATAAGGAGTTTTCCATTAGCCCTTTAGATGTGTTGCCTTCTCGGGTAACAAGTTCTATGAAAGAACAAAATGAAGTTGGATGTGTTTTGGATGTACTACCATCTGCAGATGAGATGGTGATAGAGGATGCCTACGGGGAACANGGAGAAAAGATACATCAGCCAACTACTGACCCATGTTCAAATACTACTAATACCGAACATATGAAGTCTATGGTTCCTGATAGTTTTGAATATAGTCAATATGAGGATCTTAAAACCTCAGAAATCTTAGCTTTTGATACTGCTGAAGCTGGTAGGTCTGATTTCAATAAAGAAATGTGTTCACCGAGAAGTCAAGAACAGCTTCCTGGTTGTGATTTACCAAATGGATCCCCATGCCATGCTTCAGAGTTAGACTTTAGAAACAGGCCTCATGATTGTGATGCGTACATTCCTGAATCTGCTATGGACGATATGTCTCCCGAGGATAGGATTATTTCTGAACAAAGCAATGATGCTTGCTCAGATTTGAAAGAAAATCCAGTGCATGTTGGTTTCAATTNTATGCAAAATGACTTGTCAACTGCTCAGGATTTTACTGCAGGTATTAGTAATGCATTCTCTGGGGTTAAAACAAAGAATTGTCAAAGCATGGAAACACTTGCAGAAAAGAGACATGATNAAGTTGCAGGTAAAACAAGCAATGCTGAAACAATGATTATGTCTTCTTCTCAGTTACCAAACTTAGTATACACCAGNAGAAAGCTCCGAAATGCTGTTCCCCTCCGAGGAAATTGTTCAGTTGTGGAGAGCACTGAATGTGACAACATTGAACTTGTTAATCCTGAAATGCATACTGCCAAAGGCACTGTCCCTCCCTCAAAAACCATTGAAATAAACAATTTAAATGATAAACCATGCGAACCAGATGATTCTGCAGGTTTACTTGTAGAAACACCTCAAACTCGTAGTGACGTTCGGGGTGGACAAAGCAACCCAGTGGAACTAAACCTGTCGCCATCCCAGAATCCTAACCCGTTTGCCTGTGAAAGTAAGTGCTCTGGTGCCAAGGAGGCTCAATTTATTTCAGAACCAATGCCCCATGGAAACCGGGAGCTCAAGAATAATCTGAACAGCCATGTACAGTTTGTGGGAGGCTACACACACCCAATGCCTGTTTCATCATTTCTTCTAAGAACAACAGAGGATGAAATCCACATTTGTGTTTTATGTGGCCTTCTGATGGGTCAGNACAGGACCCTGTTTACTTACAAGGTAGCTATTAAGGAACCAAATTTCGGGTGCCCTTCTGTCATGGCTCACACCTCAATACTGTTGCCAGATCCAAAACATAGCTTCATAAAAGAAACCATGGTGGAAAGATCTGGGGTGCAGTTGACTCCTGATGGACAGTATATTGTCATAATAGGCAGCATAAAAACCCCCAATTGCAGGGAAGGAAAAATTGATTGTTATTGCTCAATATGTACATCAATCTGCTCTGAGAAGAATGNGTTAAAGATTGTTCAAGTAGAACGTGGTTATGTATCAGTTGTGGCAACACTGGAAGCTGTTGACAATGTGCATTGCATATTGGTTTGTGAACCTAACCGACTTGTTTCTGTTGGAGAGAGTGGGAGACTGCAAGTGTGGATCATGAATTCGACATGGAGTGAAAAGATAGAGAATTTCATTATTCCGGATGATGGTTCCATATCCCCCAGCATCGTGGAATTGAAGCNGGTTCCAATGTGTGCTCATTTGGTTGTTGGTCGTAATATTTGTGGGGAATTTAGTTTATGGGATATTACAAAGCTCAATTGTCTTTCAAGCTTCTCTGCTTCAAAACATCCTATTAACGAGTTCTTTCCAATAAGCTTGTTCCCTTGGCTAGCAAAAGGCTCAGGATTCAGCTATGCTAGCATAGAGGAGAAAGCTGATAAACTTTTAGAAGCGACCAACTTGTGGCACTCAGATCAAAGAGAGATCTGTTCGCTTTTACCATCGGAAGATGTCGCTATGTGGCTTCTTGTCTCGACTGCCTCTGATTGTTGCCAGAATCATGTTTCAACTTCAAGTCACTGTGATATACATACAGCTAGAAGTTGGAGGCTTGCTCTTTTGGTGAAAAACAGCATAGTTTTTGGAAGTCCCTTGGATCCTAGGACAACTGGTATTGNCATCTTGGGTGGTTATGGAATCATCAGCACAAGTGATGGAGCAGTGTATATGTGGGAANTGTCTAGAGGATCCAAGCTTGGTACTCTACATCATTTCCAGGATGGCACTGTTACATGTCTTGCTACCGATGATGCGAATTCGAGAGGTGCCTTCGGAGTCGCGGATGGCAGAGGCCAACTGTTGCTTTATCTACCCCTTCATGACCGGGATTCAAATGAGTAGACANTGGTAGTGTTATTTTCCCAACGATCTATTCTTCAAGCTTGTCTATAGAAATTATTACCTTTATTATAGTTAATGCCGTTAAAGTGGTTTGGAAATTTTATATATCTGAATTCCAAATAGTGCTTCATATTGTTCTCAACCAAATTTCAGTGCTCCAATTTCANTAGAGCAACTATATTT

Protein Sequence

>Glyur002209s00037927.1
MAKTRTAGKSTRADAEQKSTDGLEIISIGSLYNGQWDKKYWSSSRGKDRYPYPVGYRAVRAHNGTTYKMEILEGVNGPKFLITSDDGNSSSGKTPDSAWEEFXKKGCPRVKIWHGKRLSSKMDGLELFGFKNPFIQRLLRELVTDINGIAERSLVPSNFCNEVSRTEHDDCHPNVGTHPDLLLCXGRSRVTGKRSRSEPKXKKLNGGSRPRSLELTCSRASDVKNEKTLGQGSSTTHNGSEEENGAHNQIGVSPSLQIMSSVGKRSNCISSKXELPLNPIDISEDKNVGAVPSERLTEFLYSANCKTTEITENLSTEKPLHRSHDVELKMSSLLVTAEDKKLMQSYSKESQGCIGIDLCAPDTLDLMQENTSDSAPNKLDKNAYGEPACEGTPEDLLNTEHDKVLRSNSNPSSEKSDFNSAGQDVAESMMSLLLPQAVPLLRNVSTDKEFSISPLDVLPSRVTSSMKEQNEVGCVLDVLPSADEMVIEDAYGEXGEKIHQPTTDPCSNTTNTEHMKSMVPDSFEYSQYEDLKTSEILAFDTAEAGRSDFNKEMCSPRSQEQLPGCDLPNGSPCHASELDFRNRPHDCDAYIPESAMDDMSPEDRIISEQSNDACSDLKENPVHVGFNXMQNDLSTAQDFTAGISNAFSGVKTKNCQSMETLAEKRHDXVAGKTSNAETMIMSSSQLPNLVYTXRKLRNAVPLRGNCSVVESTECDNIELVNPEMHTAKGTVPPSKTIEINNLNDKPCEPDDSAGLLVETPQTRSDVRGGQSNPVELNLSPSQNPNPFACESKCSGAKEAQFISEPMPHGNRELKNNLNSHVQFVGGYTHPMPVSSFLLRTTEDEIHICVLCGLLMGQXRTLFTYKVAIKEPNFGCPSVMAHTSILLPDPKHSFIKETMVERSGVQLTPDGQYIVIIGSIKTPNCREGKIDCYCSICTSICSEKNXLKIVQVERGYVSVVATLEAVDNVHCILVCEPNRLVSVGESGRLQVWIMNSTWSEKIENFIIPDDGSISPSIVELKXVPMCAHLVVGRNICGEFSLWDITKLNCLSSFSASKHPINEFFPISLFPWLAKGSGFSYASIEEKADKLLEATNLWHSDQREICSLLPSEDVAMWLLVSTASDCCQNHVSTSSHCDIHTARSWRLALLVKNSIVFGSPLDPRTTGIXILGGYGIISTSDGAVYMWEXSRGSKLGTLHHFQDGTVTCLATDDANSRGAFGVADGRGQLLLYLPLHDRDSNE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02209	9816	22387	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002209s00037927.1	PF05965.9	FYRC	76	142	1.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.623
SRR1783600	control	1.742
SRR1783602	moderate drought stress	2.637
SRR1811619	moderate drought stress	2.664

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.774
DRR006520	Root Summer glycyrrhizin high producing strain	1.783
DRR006521	Root Winter glycyrrhizin high producing strain	3.497
DRR006522	Root Winter glycyrrhizin high producing strain	3.517
DRR006523	Root Summer glycyrrhizin low producing strain	2.017
DRR006524	Root Summer glycyrrhizin low producing strain	2.051
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.713
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.652

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.899
SRR2868004	Drought Stress (root)	4.351
SRR2967015	Control (root)	5.354

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.398
SRR9715740	Leaf	0.581
SRR9715741	Leaf	0.960
SRR9715739	Root	0.160
SRR9715742	Root	3.194
SRR9715743	Root	2.895

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.981
SRR8749028	MeJA induced 9h	7.894
SRR8749029	MeJA induced 9h	4.149
SRR8749030	Uninduced	1.122
SRR8749031	Uninduced	0.852
SRR8749032	Uninduced	0.850

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.755
SRR8400027	Control - Root	3.233