Gene detail

Gene detail information of Glyur002204s00040643

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	3.00E-138	NB-ARC domain-containing disease resistance protein
NR	XP_004498673.1	0	PREDICTED: putative disease resistance RPP13-like protein 1-like isoform X1 [Cicer arietinum]
COG	YP_001660791.1	4.00E-16	apoptotic protease-activating factor 1 like [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|G7IYQ9\|G7IYQ9_MEDTR	0	LRR and NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:AES68721.1}

Sequence

Transcript Sequence

>Glyur002204s00040643.1
TTGTTTGATAAGTGTTCTTGTGTAGCTGAAGCAGAGTATACTCTACACTACACTGCTCTTTCTTCTTGTGAATTGCTATTCTTGTTTTCCTATTCTTCTGGTGAACTAAGGAACTTGATGGCCACTATTGTTGCAGAAGCACTCCTCTCCGCTTCTGTGGAGCTGTTGTTAGAAAAAATCATTTCTGGTGAGTTCGTGGACTTCTTTCGGAGGACCAAGCTTGATAAGTCACTCTTGGAAAAGCTGAAAACAACACTGCTGAGCCTTCAAGCTGTGCTGAATGATGCTGAGGAGAAACAGATCACCAATCCTGCTGTCAAGGAATGGCTGGATGACCTGAGACATGTTGTTTTTGAAGCTGAGGATTTGTTTGATGAAATCAACACCGAGGCATTGCGATGCAAAGTCAAAGCTGAGCATCAAGGCCAATCTCTGAGGGCTAAGGTGCGGAACAACCTTTCTTCTCGTTTCAAACGGTTTTATTGGGGGATAAATTCTAAAATGCAAGCATTGTTTGAAAGATTGGAAAACTTTGCACAGAAAGTTCCCATTCTTGATCTGAAAAAAGGTGTTTCCGGCAGTGTTTGGCATGGAACTCCTACAAGTTCTGTTGTAGATGAATCTTGTATTTGTGGCAGAGATGATGACGAAAAGAAACTTAAAGAGTATCTGCTGTCAGAAGATGCCGGCGATGGTGGCAGTAAAATAGGAGTGGTTTCCATTGTNGGCATGGGAGGATTGGGTAAAACAACCCTTGCCAAACTCCTATACAATGATTCGGAAGTGAAAGAGAAGTTTCAACTGAAAGCATGGGCACATATCTCAAAGGATTTAGATGTTCGCAGGTTCACTAAAACCCTTCTTGAATCTGTCACTTCAAAGAAACCCGATGTTGATGACCTGAATACTCTACAACTGCAACTGCAACAAAGTCTAAGNNATAAGAAATTTTTGCTAGTATTGGATGACATATGGGATGCAAGCTATGTCGGTTGGAACAATTTAAGGGTCATCTTTAATTCTGGGAATATGGGAAGTAAGATCATCATCACAACACGACAGACAAGTGTTGCAACGGACATGCAAACCTCTTTTATCTACTGTCTGCCGTCTCTGGCAAGTGAAGATTGTTGGTATTTACTTGCCAAACATGCATTTGGAGAAAATAATTGCAGCAAACAGTCCAACCTGGAAGCTATTGGTAGAGAAATCGCGAAGAAGTGTAATGGCTTACCATTAGCTGCAATAGCACTCGGGGGTCTTCTTCGCAAGAAATTGTCGCCAGATCACTGGAATCATGTACTGAAAAGTAACATTTGGGATTTGCCAAATGTTGATGTGCAAGCGGCTCTACTATTGAGCTATCACTATCTTCNCGCTCCTTTAAAACAATGCTTTTCTTATTGTTCAATTTTTCCGAAGAACTATGTCTTGGAAAAAAATATGGTAGTGCAGTTGTGGGTTGCAGAAGGCTTAATACCTCAGTCCAAGAGCATGGAAAAAGTAGGAGAAGAATACTTTGACGAACTAGTGTCAAGGTCGATGATACAACAACATTCTGTTGATGGGGCAAAAACCTTTGAAATGCATGATCTCCTCCATGATTTAGCCACAATGGTTTCATCCCCATACTATATGAGGCTAGACGAGCAGAAGGGGCATGTAAGTCTTGAAAGAGTACGCCATTTGTCGTACAATAGAGGGGAATTTGACTCACACAGCAAATTTGATACAATATTGCATGGAGCAAAAGGTCTACGAACCTTCCTACCATTACAAAAAGATTGGAGGGGCCACCACTTATCGAACAAGGTAGTAGGTGACTTGTTGCCAGCAATGAAAAAGTTACGCGTGTTGTCATTGTCAGAATACTGGAATCTCACTGAGTTGCCCAAATCTATTGGGAATTTGATATACCTGCGATATTTAAATCTCTCCAACACCCAGATTGAAAGGTTGCCTTCTGAAACATGCAGACTTTACAATCTGCAGACCTTGTTGTTGTCAGGCTGTTGGAAACTCGCTGAATTGCCGGAGGACATTGGAAAATTGGTGAATCTACGCCACCTTGACATCAGTGGCACTGACGTGAAGGAGATGCCTATACAAATAGCCAAGTTGCAAGATATCCAAACTTTGTCTGACTTTGTCGTTAGCAAACATCATGACGGATTGAAGGTTGCAGAGCTAGGAAAATTTCACTATCTACAGGGGAAGCTGTCCATCTCAGGGCTACAAAATATTACCGACCCCTCAGATGCTTCTCGAGCAAATTTGAAGAAAAATGAACAGATTGACGATTTGGAACTAAAATGGGATCAAATTGGAACTCTACAAGGTTCAAAAATTCAAAGTCTTGTACTTGAACAGTTGTGGCCCTCAACAAGTTTGAAGAATCTCAACATCAAAGGCTATGGTGGAACCAGCTTTCCAAATTGGTTGGGTGATTCTGCATTTGGCAACATGATGTCTTTGCACATAAGTAATTGTGGTAGTTGTTTGTTGCTGCCACCCCTTGGGCAATTACATAGCCTGAAAGAACTCCATATTGAGGGGATGAAATCAGTAAAGAGTGTTGGTGGTGAATTTTATGGAAGTAGTAATAGTCCTTCATTTCAACCATTTCCCTCCTTGGAGACACTGACATTTTATGACATGCCAGAGTGGGAGGAATGGAAAACGATTGGAGACACAACTGCGGAATTTCCCAGTCTTAAACGTCTGTCACTGAAAAAATGTCCCAAATTGAAAGAGATCATATTCTGCAACCTTCCTTCTGTAATTGAACTTGAGTTAAGGCAATGTCATCAATTGGTGGAGTCAGGGCAGCATTTAGATGATAACAACAACGTTACAAGGCGGCCATCATCCGATGGATTTAGCCAATTGAAGTTGCCTCCTCTCAATTCTCTTCAAAAGTTGACCATTAAAGACTTTCCCTCTCTGACGTCCTTTCCAAGAGACGGTCTACCCAAAACCTTACGATCTCTTACTATCAAGAATTGTCAGAATCTGGATTTCCTTCCTCTTGAATCCCTACACAAGTACACGTCACTCGAGGATCTGCAAATACGTAATAGCTGCAATTCAATGGCAACCTTTACGTTGGGCTCTCTCCCTGTCCTCAAAAGACTTGATCTTGATAAGTGTAATGGTCTGAAATCGATATTGATTGTAGAAGATGGGTCATTGCAGAGTCTCTCGTTTCTTACAAGCATCTATATAACGGATTGTGATGAACTGGAGTCATTCCCCCCGGGTGGATTGCCCATTTCTAACCTCATTCGTCTCGTGGTGCTCTCGTGCGAGAAGCTCCATTCACTTCCAGAACCAATGATCACCTTCCCCAGCCTTGAAGATTTAAACCTGTATCGCCTTCCAAATCTGCAATCTTTTGGCAAAGAGGGTTTGCCAATCAATTTACCACGACTGAGTGTTGGAGTAGTTGGAGGGATTACTGAGTTGGGTTTGGAACGTCTCACTTGTCTTACATGGTTGAAAGTTATGGGTGACGATATGGTGAATGCACTGATGAGAACCGAAAGGCCATTGCTACCCACTTCTCTCGTAACTCTGTACATCTGGAATCTGAATGAGATAGAATGCTTGGATGGGAAGTGGCTTCACCATCTCACCTCTCTCCGAAGTCTTGGCATTCACGATGCTCCGAGGCTCAAGTCGTTACCAGAAGAGGGATTGCCTTCCTCTCTTTCCAAACTGTCTATCGGGGACTGTCCGAATCTCGAGTCATTACCAGAAGAGGGATTGCCTTCCTCGTTTGTATTTGCCATGACACAACTCATCCTATATTTGATACATTCAATAAAGGAGCATCCCAGCCATTCAAGGAAGAGAAGAGAGCCATGTGGGCAAGAGTTTAGTTGAGCATAGAAACAATCTATCTAGTCCTGTTAGAGACACTGCAGCACCATCTTTCTCATTGATCTCAAATACAATTGATGTTTGAAATTTGAACTTTGAACCCCTTGCTTGAGCTGAATAGCTTACTAGGTTGTTGTACTGTGTATTGCTTGGTTTATTTGAAGCTTTTCAATTTCTGTAATAGCCTTTGGGCTTTGGCTTTGAGCCGTGGTTAATGCATTCTCCTTTATTCACAAAAGCAAAAAAAAAAAAAAAAGTTGCAAAAAGATGTAATTGAGTTATGCCTAGTCCCTAGTGTGCAAATAAGTTTATGAGTGACCTTTCTTTAAAACCTGTATTTCTTTAAAAAGAAATACAACTTG

Protein Sequence

>Glyur002204s00040643.1
LFDKCSCVAEAEYTLHYTALSSCELLFLFSYSSGELRNLMATIVAEALLSASVELLLEKIISGEFVDFFRRTKLDKSLLEKLKTTLLSLQAVLNDAEEKQITNPAVKEWLDDLRHVVFEAEDLFDEINTEALRCKVKAEHQGQSLRAKVRNNLSSRFKRFYWGINSKMQALFERLENFAQKVPILDLKKGVSGSVWHGTPTSSVVDESCICGRDDDEKKLKEYLLSEDAGDGGSKIGVVSIVGMGGLGKTTLAKLLYNDSEVKEKFQLKAWAHISKDLDVRRFTKTLLESVTSKKPDVDDLNTLQLQLQQSLXXKKFLLVLDDIWDASYVGWNNLRVIFNSGNMGSKIIITTRQTSVATDMQTSFIYCLPSLASEDCWYLLAKHAFGENNCSKQSNLEAIGREIAKKCNGLPLAAIALGGLLRKKLSPDHWNHVLKSNIWDLPNVDVQAALLLSYHYLXAPLKQCFSYCSIFPKNYVLEKNMVVQLWVAEGLIPQSKSMEKVGEEYFDELVSRSMIQQHSVDGAKTFEMHDLLHDLATMVSSPYYMRLDEQKGHVSLERVRHLSYNRGEFDSHSKFDTILHGAKGLRTFLPLQKDWRGHHLSNKVVGDLLPAMKKLRVLSLSEYWNLTELPKSIGNLIYLRYLNLSNTQIERLPSETCRLYNLQTLLLSGCWKLAELPEDIGKLVNLRHLDISGTDVKEMPIQIAKLQDIQTLSDFVVSKHHDGLKVAELGKFHYLQGKLSISGLQNITDPSDASRANLKKNEQIDDLELKWDQIGTLQGSKIQSLVLEQLWPSTSLKNLNIKGYGGTSFPNWLGDSAFGNMMSLHISNCGSCLLLPPLGQLHSLKELHIEGMKSVKSVGGEFYGSSNSPSFQPFPSLETLTFYDMPEWEEWKTIGDTTAEFPSLKRLSLKKCPKLKEIIFCNLPSVIELELRQCHQLVESGQHLDDNNNVTRRPSSDGFSQLKLPPLNSLQKLTIKDFPSLTSFPRDGLPKTLRSLTIKNCQNLDFLPLESLHKYTSLEDLQIRNSCNSMATFTLGSLPVLKRLDLDKCNGLKSILIVEDGSLQSLSFLTSIYITDCDELESFPPGGLPISNLIRLVVLSCEKLHSLPEPMITFPSLEDLNLYRLPNLQSFGKEGLPINLPRLSVGVVGGITELGLERLTCLTWLKVMGDDMVNALMRTERPLLPTSLVTLYIWNLNEIECLDGKWLHHLTSLRSLGIHDAPRLKSLPEEGLPSSLSKLSIGDCPNLESLPEEGLPSSFVFAMTQLILYLIHSIKEHPSHSRKRREPCGQEFS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02204	31099	35342	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002204s00040643.1	PF00931.17	NB-ARC	218	497	1.60E-72
Glyur002204s00040643.1	PF00560.28	LRR_1	640	658	0.67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.646
SRR1783600	control	4.217
SRR1783602	moderate drought stress	7.258
SRR1811619	moderate drought stress	7.065

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.015
DRR006520	Root Summer glycyrrhizin high producing strain	7.256
DRR006521	Root Winter glycyrrhizin high producing strain	1.635
DRR006522	Root Winter glycyrrhizin high producing strain	1.459
DRR006523	Root Summer glycyrrhizin low producing strain	7.033
DRR006524	Root Summer glycyrrhizin low producing strain	6.992
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.039
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.370

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.696
SRR2868004	Drought Stress (root)	5.144
SRR2967015	Control (root)	5.456

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.403
SRR9715740	Leaf	14.699
SRR9715741	Leaf	1.949
SRR9715739	Root	4.643
SRR9715742	Root	4.874
SRR9715743	Root	4.240

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.642
SRR8749028	MeJA induced 9h	4.100
SRR8749029	MeJA induced 9h	3.394
SRR8749030	Uninduced	4.159
SRR8749031	Uninduced	1.427
SRR8749032	Uninduced	1.339

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.861
SRR8400027	Control - Root	11.266