Gene detail

Gene detail information of Glyur002204s00040640

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	4.00E-132	NB-ARC domain-containing disease resistance protein
NR	XP_004498673.1	0	PREDICTED: putative disease resistance RPP13-like protein 1-like isoform X1 [Cicer arietinum]
COG	YP_007057693.1	2.00E-08	Leucine Rich Repeat (LRR)-containing protein [Rivularia sp. PCC 7116]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	2.00E-161	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|G7J0H9\|G7J0H9_MEDTR	0	LRR and NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:AES68740.1}

Sequence

Transcript Sequence

>Glyur002204s00040640.1
ATGAATACTCTACGCACAAACTCTTTCACCTCAAAAAGGAGTCATACTAGTGACCTGAATACTCTACAAGTGAATTTGCAACAGAGTCTAAGCCATAAAAAGTTTTTGCTAGTATTGGATGACATATGGGATGCAAGCTATGTCCATTGGAACAATCTAAAGGGCATCTTTAATTCTGGCAAAATGGGAAGTAAGATCATGATCACAACACGAGATGAAAGAGTTGCATTAGCCATGCAAACCTTTCTTCCGATCCACTACTTGAGACCTCTGGAAAGTGAAGACTGCTGGTCTTTACTTGCCAAACATGCGTTTGGAGCAACTAACTACCACCGACGGTCCAACCTAGAAGTTATTGTCAAAAAAATTGCCAAAAGATGTGATGGGTTACCGTTAGCTGCAGTGGCACTTGGGGGTCTTCTCCGCACCAAATTGTCCCAGGATGACTGGAATCATGTACTAAAAAGTAACATTTGGGAGTTGGCAAATGTTGAGGTGCAACCGGCTCTGCTATTGAGCTATCATTATCTTCCGGCTCCTTTAAAACGATGCTTTGCTTATTGTTCAATTTTTCCGAAGAACTCCATCTTAGAAAAAAATATGATAGTCCAGCTGTGGATTGCAGAAGGCTTAGTACATCAGTCCAAGAGCCAGAAAAGTTGGGAAAAGGTGGGAAAAGAATACTTCGATGAACTAGTGTCAAGGTCGCTAATACATCAAAGGTCTGTTGATGGGCAAGCAAACTTTGAAATGCATGACCTCCTCAATGATTTAGCTACAACGGTTTCATCTTCATACTGTATGAGGCTGGACGAGCAGAAGTCACGTGTAAGTCTTGAAAGGATATGCCATTTGTCATACAATAGAGGGCAATATGACTCACACAGGAAATTTGATACATTGCATGCATTAAAAGGTCTACGAACCTTCCTAGCCTTGCCATTACAAGAACAGTCATTCCATCATTGCTACCTATCAAACAATGTAGTAGGTGACCTATTGCCAGCAATGAAAAAGTTACGTGTAGTGTCTTTGTCAAACTACCAGAATATCATTGAGTTGCCCAAATCTATTGGGAATTTGATATACCTGAGATACTTAAATCTCTTCCACACTGATATTGAAAGGTTGCCTTCTGAAACATGCAAACTTTATAACTTGCAGACTTTGTTGTTGTCAGGCTGTAGCAGTCTCATTGAATTGCCAGAAGACATGGGAAAATTGGTGAATCTACGCCACCTTGACATTAGTGNCACTTCATTGAGTGAGATGCCTATACAAATTGCAAGACTGCAAAATCTCCAAACTTTGTCTAATTTTGTTGTCAGCGAAAAACGTGATGGATTGAAGGTTGCAGAGCTAGGAAAGTTTCCCCATATACAGGGGAAGCTTACCATCTCAGAGCTACAAAATGTTACTGACCCCTTTGATGCTTCTCAAGCAAATTTGAAGATGAAAGAACAGATTGANGAATTGGAACTAAATTGGGATATGTCTCAAGGTTCAACAATTCAAAGTCCTGTACTTGAAGGGTTGCGGCCCTCAACAAATTTGAAGAATCTCACCATCGAAGGCTATGGTGGAACCAGCTTTCCAAGTTGGTTGGGTGATTCTGCATTTGACAACATGGTGTCTTTGCACATAAGTAATTGTGATAGTTGTTCATTGCTGCCACCTCTTGGGCAATTACATGGCCTGAAAGAACTCTATATTTACAGGATGGAATCAGTAAAGAGTGTTGGCGCTGAATTTTATGGTAGTAGTAATAGTCCTTTATTTGAACCATTTCCCTCCTTGGAGACATTGACATTTGAGGACATGCCAGAGTGGGAGGAATGGAACTTGATTGGAGGTACAACTATAGGGTTTCCTAGTCTAAGACATTTGTCACTAAAAGAATGTCCTAAACTCAAAGGAAACATACCCATCAACCTTCCTTCCTTAATTGAACTTNAGTTAACGGAATGTGATCTACTGNTGGAGTCAGAACATTCAGATGATAATAGAAACACTATAAGGCCATTAGATGTTGGATTCATCCAATTGATGTTGCCTATCAATTCTCTTCGAAAGTTGAGGATAGAAGGCTTTCCCACTTTGACATCCTTCCCAAGTAATGGTCTACCCAAAACCTTACAATCTCTTGCTATCCGTGATTGTCAGAATCTGGAATTCCTTCCTCTTGAATCCTTACACAATTACACATCACTTGAGGATTTGGAAATATTTCAAAGTTGTTATTCAATGACGTCATTTACGTTGGGCTCTCTCCCTGTCCTCAAAAGTCTGTTTATTTATGGTTGTAAAGATCTGATATCGATATTCANTGCAGAAGACACATTGTCGCAGAGTCTCTCCTTACAATCTCTNACTATCCGTTATTGTGAGAATTTGGAATTCCTTCCTGCTGAATCCTTGCTCAATTACACATCACTCGAGGATTTGTCAATATCTGATAGTTGTGATTCAATGACATCCTTTACCTTGGGGTCTCTCCCTGTCCTTAAGAGTGTGTCCATTGAAGCTTGTAAAAATTTGAAATCTATACTCATTGCAGAAGATGCATCGCAGAGTCTCTCGTTTCTTAGAAGCATCACAATATGCCATTGTGATGAGCTGGAGTCATTTTCCCGGGGTGGATTGGCCACTCCTAACCTCATTGATTTTGTGGTGTATAATTGTAAAAAGCTTCCTTCACTACCTGAACCAATGAACACTCTAGCTGGCCTTCAAGATTTGCATATTTTTGGCCTTCCAAGTCTGCAATCTTTTGCCAAAGAGGGTTTGCCTATCAATTTAAGGAACCCATATATCAGCGGTGTTGGAGGGATAACTGAGTGGGGTTTGGAACGACTCACTAGTCTTTCCGTGTTGGACATTAAAGGTGATGATATTGTGAAGGCGCTGATGAAAATGGGAGCGCCATTGCTACCAGCTTCCCTTGTGACCCTGCGCATCTCTTGGCTTGTTGATATAAAACGCTTGGATGGGAAGTGGCTTCACCATCTCACCTCTCTCCAAGACCTTGAAATTTCATTCTGTTACAACCTCAAGTTGTTGCCTGAAGAGGGATTGCCTTCCTCTCTTTCTGTACTGCGTATCTACGACTGTCCATTGCTGGAAGCAAGTTGGCGGAGGAAGCGAGGGAAAGAGTGGCGTAACATTGTTTGCATTCCCTCCATAATTATTGATGGCAAAATGATCAGATCCAGGTGA

Protein Sequence

>Glyur002204s00040640.1
MNTLRTNSFTSKRSHTSDLNTLQVNLQQSLSHKKFLLVLDDIWDASYVHWNNLKGIFNSGKMGSKIMITTRDERVALAMQTFLPIHYLRPLESEDCWSLLAKHAFGATNYHRRSNLEVIVKKIAKRCDGLPLAAVALGGLLRTKLSQDDWNHVLKSNIWELANVEVQPALLLSYHYLPAPLKRCFAYCSIFPKNSILEKNMIVQLWIAEGLVHQSKSQKSWEKVGKEYFDELVSRSLIHQRSVDGQANFEMHDLLNDLATTVSSSYCMRLDEQKSRVSLERICHLSYNRGQYDSHRKFDTLHALKGLRTFLALPLQEQSFHHCYLSNNVVGDLLPAMKKLRVVSLSNYQNIIELPKSIGNLIYLRYLNLFHTDIERLPSETCKLYNLQTLLLSGCSSLIELPEDMGKLVNLRHLDISXTSLSEMPIQIARLQNLQTLSNFVVSEKRDGLKVAELGKFPHIQGKLTISELQNVTDPFDASQANLKMKEQIXELELNWDMSQGSTIQSPVLEGLRPSTNLKNLTIEGYGGTSFPSWLGDSAFDNMVSLHISNCDSCSLLPPLGQLHGLKELYIYRMESVKSVGAEFYGSSNSPLFEPFPSLETLTFEDMPEWEEWNLIGGTTIGFPSLRHLSLKECPKLKGNIPINLPSLIELXLTECDLLXESEHSDDNRNTIRPLDVGFIQLMLPINSLRKLRIEGFPTLTSFPSNGLPKTLQSLAIRDCQNLEFLPLESLHNYTSLEDLEIFQSCYSMTSFTLGSLPVLKSLFIYGCKDLISIFXAEDTLSQSLSLQSLTIRYCENLEFLPAESLLNYTSLEDLSISDSCDSMTSFTLGSLPVLKSVSIEACKNLKSILIAEDASQSLSFLRSITICHCDELESFSRGGLATPNLIDFVVYNCKKLPSLPEPMNTLAGLQDLHIFGLPSLQSFAKEGLPINLRNPYISGVGGITEWGLERLTSLSVLDIKGDDIVKALMKMGAPLLPASLVTLRISWLVDIKRLDGKWLHHLTSLQDLEISFCYNLKLLPEEGLPSSLSVLRIYDCPLLEASWRRKRGKEWRNIVCIPSIIIDGKMIRSR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02204	6617	9832	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002204s00040640.1	PF00931.17	NB-ARC	14	216	8.90E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.550
SRR1783600	control	2.580
SRR1783602	moderate drought stress	3.550
SRR1811619	moderate drought stress	3.545

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.729
DRR006520	Root Summer glycyrrhizin high producing strain	1.642
DRR006521	Root Winter glycyrrhizin high producing strain	3.777
DRR006522	Root Winter glycyrrhizin high producing strain	3.599
DRR006523	Root Summer glycyrrhizin low producing strain	1.193
DRR006524	Root Summer glycyrrhizin low producing strain	1.093
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.440
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.343

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.893
SRR2868004	Drought Stress (root)	3.713
SRR2967015	Control (root)	4.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.519
SRR9715740	Leaf	2.078
SRR9715741	Leaf	0.872
SRR9715739	Root	0.487
SRR9715742	Root	0.990
SRR9715743	Root	0.669

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.065
SRR8749028	MeJA induced 9h	5.509
SRR8749029	MeJA induced 9h	2.978
SRR8749030	Uninduced	1.846
SRR8749031	Uninduced	2.085
SRR8749032	Uninduced	2.591

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.765
SRR8400027	Control - Root	3.700