Gene detail information of Glyur002203s00035384 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05550.1 | 1.00E-05 | Hypoxia-responsive family protein |
| NR | XP_007141712.1 | 1.69E-36 | hypothetical protein PHAVU_008G218800g [Phaseolus vulgaris] |
| trEMBL | tr|V7BB83|V7BB83_PHAVU | 6.00E-37 | Uncharacterized protein {ECO:0000313|EMBL:ESW13706.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02203 | 38782 | 46110 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002203s00035384.1 | PF04588.8 | HIG_1_N | 115 | 137 | 0.00014 |
| Glyur002203s00035384.2 | PF04588.8 | HIG_1_N | 11 | 60 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.873 |
| SRR1783600 | control | 0.934 |
| SRR1783602 | moderate drought stress | 0.580 |
| SRR1811619 | moderate drought stress | 0.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.976 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.958 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 837.802 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 804.405 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.159 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.552 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.165 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.390 |
| SRR2868004 | Drought Stress (root) | 0.199 |
| SRR2967015 | Control (root) | 0.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 1.533 |
| SRR9715742 | Root | 2.577 |
| SRR9715743 | Root | 2.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 609.422 |
| SRR8749028 | MeJA induced 9h | 582.339 |
| SRR8749029 | MeJA induced 9h | 868.785 |
| SRR8749030 | Uninduced | 511.364 |
| SRR8749031 | Uninduced | 439.573 |
| SRR8749032 | Uninduced | 883.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.483 |
| SRR8400027 | Control - Root | 20.596 |