Gene detail information of Glyur002188s00037692 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G13830.2 | 1.00E-14 | DNAJ-like 20 |
| NR | XP_004504775.1 | 2.27E-76 | PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Cicer arietinum] |
| COG | YP_001356422.1 | 6.00E-14 | co-chaperone-curved DNA binding protein A [Nitratiruptor sp. SB155-2] |
| Swissprot | tr|Q9SDN0|DNJ20_ARATH | 2.00E-18 | Chaperone protein dnaJ 20, chloroplastic (Precursor) |
| trEMBL | tr|C6TDU4|C6TDU4_SOYBN | 6.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G24740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02188 | 28251 | 28808 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002188s00037692.1 | PF00226.26 | DnaJ | 58 | 124 | 2.60E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.250 |
| SRR1783600 | control | 1.126 |
| SRR1783602 | moderate drought stress | 0.340 |
| SRR1811619 | moderate drought stress | 0.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.625 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.713 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.121 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.400 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.317 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.387 |
| SRR2868004 | Drought Stress (root) | 44.434 |
| SRR2967015 | Control (root) | 62.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.972 |
| SRR9715740 | Leaf | 8.022 |
| SRR9715741 | Leaf | 27.819 |
| SRR9715739 | Root | 28.762 |
| SRR9715742 | Root | 24.090 |
| SRR9715743 | Root | 26.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 124.137 |
| SRR8749028 | MeJA induced 9h | 50.630 |
| SRR8749029 | MeJA induced 9h | 50.940 |
| SRR8749030 | Uninduced | 293.598 |
| SRR8749031 | Uninduced | 58.896 |
| SRR8749032 | Uninduced | 160.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.064 |
| SRR8400027 | Control - Root | 17.350 |