Gene detail information of Glyur002188s00037691 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64080.2 | 4.00E-37 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | XP_003615638.1 | 1.35E-94 | Non-specific lipid-transfer protein [Medicago truncatula] |
| Swissprot | tr|Q8VYI9|NLTL5_ARATH | 3.00E-46 | Non-specific lipid-transfer protein-like protein At5g64080 (Precursor) |
| trEMBL | tr|G7KE52|G7KE52_MEDTR | 5.00E-95 | Uncharacterized protein {ECO:0000313|EMBL:AFK42078.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02188 | 20066 | 22629 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002188s00037691.1 | PF14368.1 | LTP_2 | 25 | 122 | 6.70E-15 |
| Glyur002188s00037691.2 | PF14368.1 | LTP_2 | 13 | 110 | 5.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 327.474 |
| SRR1783600 | control | 327.722 |
| SRR1783602 | moderate drought stress | 98.415 |
| SRR1811619 | moderate drought stress | 97.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 321.977 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 324.848 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.740 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.692 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 104.857 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 105.060 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.422 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 205.803 |
| SRR2868004 | Drought Stress (root) | 89.786 |
| SRR2967015 | Control (root) | 78.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.203 |
| SRR9715740 | Leaf | 4.804 |
| SRR9715741 | Leaf | 9.136 |
| SRR9715739 | Root | 150.538 |
| SRR9715742 | Root | 66.083 |
| SRR9715743 | Root | 76.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 105.863 |
| SRR8749028 | MeJA induced 9h | 60.425 |
| SRR8749029 | MeJA induced 9h | 57.761 |
| SRR8749030 | Uninduced | 3.143 |
| SRR8749031 | Uninduced | 0.297 |
| SRR8749032 | Uninduced | 1.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 367.297 |
| SRR8400027 | Control - Root | 276.808 |