Gene detail information of Glyur002188s00037690 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15820.1 | 3.00E-107 | light harvesting complex photosystem II subunit 6 |
| NR | AAD27882.2 | 8.55E-172 | chlorophyll a/b-binding protein CP24 precursor [Vigna radiata] |
| Swissprot | tr|P27524|CB4A_SOLLC | 3.00E-152 | Chlorophyll a-b binding protein CP24 10A, chloroplastic (Precursor) |
| trEMBL | tr|Q9XQB6|Q9XQB6_VIGRR | 3.00E-172 | Chlorophyll a/b-binding protein CP24 {ECO:0000313|EMBL:AAD27882.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02188 | 13826 | 16129 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002188s00037690.1 | PF00504.16 | Chloroa_b-bind | 71 | 247 | 2.20E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.342 |
| SRR1783600 | control | 7.738 |
| SRR1783602 | moderate drought stress | 3.316 |
| SRR1811619 | moderate drought stress | 3.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.099 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.866 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.911 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.751 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.172 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.149 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 83.856 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 83.516 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.920 |
| SRR2868004 | Drought Stress (root) | 10.341 |
| SRR2967015 | Control (root) | 5.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 79.363 |
| SRR9715740 | Leaf | 70.799 |
| SRR9715741 | Leaf | 57.215 |
| SRR9715739 | Root | 3.712 |
| SRR9715742 | Root | 3.741 |
| SRR9715743 | Root | 3.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.642 |
| SRR8749028 | MeJA induced 9h | 6.390 |
| SRR8749029 | MeJA induced 9h | 9.138 |
| SRR8749030 | Uninduced | 3.896 |
| SRR8749031 | Uninduced | 0.308 |
| SRR8749032 | Uninduced | 5.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.615 |
| SRR8400027 | Control - Root | 11.369 |