Gene detail

Gene detail information of Glyur002188s00037689.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10160.1	7.00E-84	Thioesterase superfamily protein
NR	KEH31236.1	4.76E-135	beta-hydroxyacyl-ACP dehydratase [Medicago truncatula]
COG	YP_007141585.1	6.00E-49	3-hydroxyacyl-(acyl-carrier-protein) dehydratase [Crinalium epipsammum PCC 9333]
trEMBL	tr\|A0A072UPD2\|A0A072UPD2_MEDTR	2.00E-135	Beta-hydroxyacyl-ACP dehydratase {ECO:0000313\|EMBL:KEH31236.1}

Sequence

Transcript Sequence

>Glyur002188s00037689.1
GGCAGGCTGGCAGGGCCTATTTTGTGGTTCAACAAACAACGTTGGAGACTCCGTCCTGCCAACCCAAACAACAACACTATCACTGGTTGCATTTGCATCCTTGTTACTTCCGCCTCTGTAGGTCCCATCTTAGACAATTTAATAACAAATAAATGCATCCACAGCACGCACAAACTGTACTCACAGATTAGAACAGTTCAGACTTCAGAGCCAAGCTCAGTGTTCCTCAATCAACAATGGCAGCCTCTGCTTTCTCCAACACCCTCTCTCCCACCTCTCCCACTTTCTCTGCTCCCCATTCTTATCTTCCCAAATTCTCATCTCTCAGATTTCCCACCTCAAGATCTCCGCCCCTGGCTACCCAGCTAAGGAACACCCGTGGCACAAGACGGTTTACAGCGCTTTGTTCTTCAGAATCTTCAAATGGTCCAAAAGAAGACACCCCGATTGAATTAAGGTATCCCGCATTCCCAACAGCATTGGACATCAATCAGATTCGTAATATCCTGCCCCACAGGTTTCCGTTTCTTCTAGTGGATAGAGTTATTGAATACAACCCTGGAGTTTCTGCAGTGGGCATAAAGAATGTAACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGACCAATCATGCCTGGTGTTCTCATGATTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATGTTGCAACCTGAAGTGGGAGGTTCTCGTGAGAATTTCTTCTTTGCTGGAATAGACAAAGTACGATTTAGGAAGCCAGTGATTGCAGGAGACACCTTAGTTATGAGAATGACACTTATCAAACTGCAAAAGCGATTTGGAATAGCAAAGATGGAAGGGAAGGCATATGTTGGGGGTGAAGTTGTGTGTGAGGGGGAGTTTTTGATGGCTACTGGGTCCGGTAGCGAATAATTAGAGAAACCCTCCATCAAAAAATAAGTTGATTTTACTCAGTTTTTTTTTTTTAATGTTTCTAGCACTCTTTTGGTTGTTTACCCCGCAATTTTTTTATGTATGAACATAGTGAGCATTTGACCTTATATACCTCCCATACTCAGATTTNTTGCATAGCTTTGCATTATTTTCACCATGTTGAATATGAGTACGAGAAAGATAATTGAAACTTTGTATGCAATGGGCTACATGCTGTAAACATGGCCCAATGTTAACTTTTCAAGTATCCTCGTCCCTCTCACTCCACTTAATTGATATGCAAATTTATAAAAACCAGACAGGAGCTAAATGCATCCAAGACAAGAGCATAGGATTTCAGTTTTTCATTGGAGAAATCTGGCTTTTACAGGAACATTATTTTGTACTTTACAAGCCAAGAGCACCAAGAGGTGTCTTCCCTTGTCCAGCCTCAAAGTAGAAAACTAGCATAGCCAACATTGCAATCCTAGCATGCTTAATCTCAGCCAGTTTCAGTCTCTCTAGCTTCTCTGTATCTGGAATGTAAACTCCATCCTTGATTGTGCCAGCAAATCCCAAAGGGTCAAAGAATTTGCCACCAGGGTAGCCTTGCTCACCAGTGGCATTGGCAAAGTTCTCAGCAGTTCTTGACCATGGGGTTGCCCATTCCACTGACTGTGAATCAGGGTTGAAGAAATCCACCCATCTCTTACTCTCAACCCATCCCATGAGAAGCAATTGGGTGCCCAGAAGGGAACCAAAGGAGAAAGGAGCAATTGCATTGGGGTCAGCTCCAGCCTCAAACCATGGGACTCCACTCCATGCCTGCCCAACAAAGATGCCCACAACTGCAGCCATTGCCCACCTCCCATGAATCAGCTCAGCCTCTCTGTACCATTTGAGGAATGCTGGGTCCTTGCCAAGGCCTAGTGGGTCAAAACCAAAGTCACCCGGTAGCCTGCAATTGCAACATTGATCAAAATAGAGAGACTAAGAGTGCGN

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02188	11816	15444	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02372	fabZ	EC:4.2.1.59	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Biotin metabolism	map00780

Gene Ontology

biological_process
GO:0006633 fatty acid biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0016836 hydro-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002188s00037689.1	PF07977.8	FabA	91	216	3.40E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.575
SRR1783600	control	30.797
SRR1783602	moderate drought stress	13.795
SRR1811619	moderate drought stress	13.680

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.017
DRR006520	Root Summer glycyrrhizin high producing strain	21.656
DRR006521	Root Winter glycyrrhizin high producing strain	2.941
DRR006522	Root Winter glycyrrhizin high producing strain	2.663
DRR006523	Root Summer glycyrrhizin low producing strain	13.144
DRR006524	Root Summer glycyrrhizin low producing strain	13.033
DRR006525	Leaf Summer glycyrrhizin high producing strain	61.836
DRR006526	Leaf Summer glycyrrhizin high producing strain	61.237

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.501
SRR2868004	Drought Stress (root)	19.015
SRR2967015	Control (root)	15.375

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.687
SRR9715740	Leaf	47.971
SRR9715741	Leaf	41.774
SRR9715739	Root	10.642
SRR9715742	Root	13.297
SRR9715743	Root	10.435

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.523
SRR8749028	MeJA induced 9h	10.730
SRR8749029	MeJA induced 9h	13.781
SRR8749030	Uninduced	4.783
SRR8749031	Uninduced	0.860
SRR8749032	Uninduced	3.504

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.572
SRR8400027	Control - Root	31.916