Gene detail information of Glyur002185s00036361 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61900.3 | 9.00E-52 | Calcium-dependent phospholipid-binding Copine family protein |
| NR | XP_003541443.1 | 1.24E-66 | PREDICTED: protein BONZAI 1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q941L3|BON1_ARATH | 7.00E-60 | Protein BONZAI 1 |
| trEMBL | tr|K7LZV7|K7LZV7_SOYBN | 5.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G21421.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02185 | 31537 | 33707 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002185s00036361.1 | PF07002.11 | Copine | 133 | 163 | 2.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.534 |
| SRR1783600 | control | 6.830 |
| SRR1783602 | moderate drought stress | 10.735 |
| SRR1811619 | moderate drought stress | 10.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.681 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.539 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.313 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.187 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.918 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.577 |
| SRR9715740 | Leaf | 9.672 |
| SRR9715741 | Leaf | 25.606 |
| SRR9715739 | Root | 3.777 |
| SRR9715742 | Root | 11.169 |
| SRR9715743 | Root | 8.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.647 |
| SRR8400027 | Control - Root | 25.548 |