Gene detail

Gene detail information of Glyur002184s00035331

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39730.1	0	rubisco activase
NR	XP_007134060.1	0	hypothetical protein PHAVU_010G016000g [Phaseolus vulgaris]
COG	YP_007111326.1	3.00E-111	ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q7X9A0\|RCA1_LARTR	0	Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic (Precursor)
trEMBL	tr\|V7AKH4\|V7AKH4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW06054.1}

Sequence

Transcript Sequence

>Glyur002184s00035331.1
CTTTCCCTCAACTCAATCCAAACACACTTTTGAAAAAACTCAGTTCAATTTCGTCCTCTTCCCCCTTCAACACTCCTAGCTACCAAACTAACTTTGTTTTGGTTTCCAACATAACAACATAATGGCAGCTTCAGTGCCAACCATTGGAGCCTTGGCACCGTTGAAATTGAATGGCCCTAGCAGTGGAGTTACAGTGAAAAGTTCAGCATTTTTTGGAACAGGCTTGAAGAAAGCCAGTTCTTTGATTTCTAGGCAGAAGGGATTGTGTGGGAGTTTCAAGGTTTCTGCACAAATTGAATATGATGAGGAGAAGCAGACCTCAAAGGACAGATGGGGTGGACTTGCCTATGATGTCTCAGATGATCAGCAAGATATCACCAGAGGGAAGGGAATGGTGGACACTCTCTTCCAAGCTCCAATGGAATCTGGGACTCACTATGCTGTCATGAGTTCCTATGATTATATCAGTACCGGTCTTCGCCAGTACAATTTGGACAATACCATGGATGGCTTTTATATTGCTCCTGCATTTATGGACAAGATTGTTGTTCACATCACCAAGAACTTTCTTAGCTTGCCAAATATTAAGGTTCCTCTTATTTTGGGCATTTGGGGAGGCAAAGAATTGGAAAGTGGAAATGCTGGAGAGCCTGCAAAGTTGATTAGGCAAAGGTACCGCGAGGCGGCAGATATCATTAGAAAAGGGAAGATGTGCTGTCTCTTCATCAATGATCTTGATGCAGGAGCTGGTAGGATGGGTGGCACCACCCAATACACAGTCAACAACCAGATGGTGAATGCAACCCTCATGAACATTGCTGACAACCCCACCAATGTCCAACTTCCTGGCATGTACAACAAGGAGGAGAATCCCCGTGTCCCCATCATAGTCACCGGCAATGACTTCTCAACATTGTATGCTCCTCTCATCCGCGATGGACGCATGGAGAAATTCTACTGGGCGCCTACTCGCGACGACAGGATCGGTGTCTGCCAAGGTATTTTCAGGACAGATGGTGTCCCCAAGGATGACATTGTCAAGCTTGTTGACACCTTCCCTGGGCAATCAATTGTGTATGATGATGAAGTCAGGAATTGGATTTCTGGTGTTGGGGTGGAGAATGTTGGGAGAAGGCTTGTGAATTCAAAGGAGGGACCTCCAACTTTTGAGCAACCAAAGATGAATCTTGAGAAGCTCCTTGAGTATGGAAATATGCTTGTCCAAGAACAAGAGAATGTGAAGAGGGTCCAATTGTCTGACAAGTACCTCAAAGAAGCAGCTCTTGGAGATGCAAATGAAGATGCCATGAAGACTGGAAACTTCTATGGACAAGGAGCTCAGCAAGTTCATGTTCCTGTCCCTGAAGGTTGCACTGACCCTGCTGCAGAGAACTATGATCCAACAGCCAGAAGTGATGATGGAAGTTGCACATACAAATTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02184	38712	41483	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002184s00035331.1	PF00004.24	AAA	167	279	1.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.211
SRR1783600	control	0.200
SRR1783602	moderate drought stress	0.676
SRR1811619	moderate drought stress	0.653

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.074
DRR006521	Root Winter glycyrrhizin high producing strain	8.454
DRR006522	Root Winter glycyrrhizin high producing strain	8.090
DRR006523	Root Summer glycyrrhizin low producing strain	0.190
DRR006524	Root Summer glycyrrhizin low producing strain	0.224
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.836
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.900

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.142
SRR2868004	Drought Stress (root)	7.734
SRR2967015	Control (root)	2.398

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.143
SRR9715740	Leaf	57.592
SRR9715741	Leaf	68.951
SRR9715739	Root	0.233
SRR9715742	Root	0.722
SRR9715743	Root	0.545

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.422
SRR8749028	MeJA induced 9h	67.665
SRR8749029	MeJA induced 9h	97.733
SRR8749030	Uninduced	2.924
SRR8749031	Uninduced	28.104
SRR8749032	Uninduced	81.482

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.880
SRR8400027	Control - Root	7.755