Gene detail information of Glyur002184s00035324 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47140.1 | 1.00E-77 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | KEH39093.1 | 1.62E-144 | short-chain dehydrogenase/reductase [Medicago truncatula] |
| COG | YP_007565317.1 | 3.00E-45 | putative oxidoreductase [Ilumatobacter coccineus YM16-304] |
| Swissprot | tr|Q94K41|SDR3B_ARATH | 6.00E-106 | Short-chain dehydrogenase reductase 3b |
| trEMBL | tr|A0A072VCB0|A0A072VCB0_MEDTR | 6.00E-145 | Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:KEH39093.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02184 | 305 | 3101 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002184s00035324.1 | PF13561.1 | adh_short_C2 | 44 | 279 | 6.20E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.986 |
| SRR1783600 | control | 5.080 |
| SRR1783602 | moderate drought stress | 12.077 |
| SRR1811619 | moderate drought stress | 13.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.069 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.599 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.126 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.761 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.011 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.659 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.548 |
| SRR2868004 | Drought Stress (root) | 0.672 |
| SRR2967015 | Control (root) | 0.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 44.625 |
| SRR9715740 | Leaf | 1.967 |
| SRR9715741 | Leaf | 10.102 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 2.837 |
| SRR9715743 | Root | 2.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.122 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.070 |
| SRR8749030 | Uninduced | 0.067 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.277 |
| SRR8400027 | Control - Root | 5.861 |