Gene detail

Gene detail information of Glyur002183s00035946

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04460.3	0	RING/U-box superfamily protein
NR	XP_006606303.1	0	PREDICTED: trichohyalin-like isoform X2 [Glycine max]
Swissprot	tr\|Q7XI08\|XB34_ORYSJ	4.00E-09	Probable E3 ubiquitin-protein ligase XBOS34
trEMBL	tr\|K7N4F6\|K7N4F6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G33300.2}

Sequence

Transcript Sequence

>Glyur002183s00035946.1
GTGGCGCAATACTTCGTAGTCGTACTCCATAAACAAGCTTAGTTTTATTTTGTCGGTATAAACAAGCTTAATTTGGTTTTCGGTTTGTAATAAAAAAATGGTTAATGGAAAACACAAATTTCGTGTTAAGATTAGATTGGATTAAGAACACAACACAACACAACACGCCACACCACAGCCACTCTCTCTCCCTCCTTGTTTCTCTCTCCTCTGTAATGATAATTTATAAATTCTGACATCATAGCCTCCTCTCATCTCTCTTTTTTCCTGTTTCTGCGTCTTTTGTTCTTCCAATTTCACCAAAATTTTCTCATCACTTTTATTTCCCTCTCTTCAATTCTCTGTTTTCCTCCATTGCTGCCACGAAATCTAGGGCTTCCTTCATCAATTACACCAGGCGCAAAACGCACTCCCAGGTGGCATGTGTGGTGGGGCTTTGAATTTCGATTTGATTAGGGAAACCCTTTTTTTGTTTCCCCCACATTTCCCCATGGGCTTGACCCTTAGATTGAGCTTCCCTTTTTTCTTTTTCTTTTTTGTTTTCCTTTTCGGTTTTCGAGAGATTGAAATGGTGGTCTAGCAACTGGGTTGTAATTATTTTAGTCTTAGCAAATGGAGTTTGCTTGAGGTGGTGTATTTATACTTGGTGGGTTGATACACAGGGATAGAGGTTGGGTGGGTTATATAGTGTAGTGGTAAGGATGACAGATTTTCAACCGCTACAGCAGAAGCCTGAACCTGCTGATGCTCATGCCCATGCCCATGCCCATGCCGAGTTTGAGCATGGACTGGAGGACTTTATGCGTGGCCACTTGGATGATTGCATGTCATTTGCTTCGTGTAGCTCCTCCCGGGCACCGGATGACGAGGATGATGAGGGTGATCAGCTGGTTCGGAGGAGACGGAGGTCTGATCTTGAAGGGGATGATTTAGCAGAGTCATCGGCAGCGCGNAGGCGCCATTCACGGATTTTGAGCAGATGGGCTGCCCGGCAGGCGCAGGAGATGATAACTACCATTGAAAGGAGGAATCGAGAGTCTGAGTTGATGGCACTCGCAGGATTACATACTGTCTCGATGCTGGACTCCTCATTTCTGAGGGGGTCACAGTCTCCTACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCAAGCACTCAGGCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATTTGTTGANTCGGGCACGTGAAAGGATGAGGGAAAGGTTGCGGCAGCAAAGGAGTTCTGACTCTAACACCAATGTGTCAAGTGCCATGTCTGACAGTCGTGGGAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGATTGGATCACGGAATGCACATGGGAATCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGACATTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCANTCATCTAATGTAAGTCAGAGAAACAATAACCGTAGAGCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTAAGAATTGTNAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGGTTCACGTGGAAGCCGNAGGGATGCTCAAGTAAGTGAATCTTCTCAAGTTGATCGAGTCCGTGATGTGGTAGCTGATCATGATGAGGGTCAGCCAGAGCATGTTCGGCGGGACAGGTTGAGGTTGCGTGGAAGACAGGCTCTAGTCGATTTGCTTGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTCGCTCATCGCAACCGTATTCAGTCATTGCTAAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCTCCGTCTATGGCTGCCAGTGAATTAGTTCAATTAAGACAACGACACACGGTCTCTGGTTTAAGGGAAGGATTTCGTTCAAGGTTAGAAAATATTGTCCGTGGTCAAGCTGGCACCAATGCTGATGCCACATCAAATAGTAACAATGAAACAATAAGCGATGGAAACCAGTCAAATAATCTGATTGATACCCAACAAGAAAATTATGACCAAGAGCATATTAGGAGCCCAGATACTGATGTGCGTCAGTTGCCTAATCAAACAGGAGCTTTGGAGAGTAGCACCAGTGAGACTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGAATTGGCAGGAACAGATTGCTGAAAATGGGGGAGGAAACTGGCAGCAGAGAACTGGTCCATTCAATCAGCTCAGAGATGGAAGGGCAGCCAGTGATTGGCCACAGGAAACTCCCAGAAATTTAGCTGGGCAAGATCCTCATCCACGGGAAGCTCAAAGAATTTGGCATGAGGATAACACAAGGGAAGCTGTTGGTAATTGGTCCGAAGGACCTTCTGGAGTTTCAAGGAATCGCCGTGGTGTTCCTTTTAGAAGATTCAATAGATTTCATCCCCCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAGCTTTTGAGCAGGAGAAGTGTCTCCAACCTTCTTCGCAGTGGTTTTCGTGAAAGTTTGGATCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATCGGAACTTGCCAACACCAACTCCTNCCTCACCTGAACACGACCCTGATCAGCAGGGCGAGGAACATAATGAGGGTCAGCGTGAAGCCATTAACAGACCTTCACTGGTGTTGCCTTCTCCACCAGTACCTCCGCCACAACCACTGTGGCACCAAGATTTGCATCAAACTGGATGGTCTCGTCATAGCATGCATCGCTCTGAAATTGAATGGGAGATAATGAATGACTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGTTCTGTTAGACAGGAGGTCTCTGCAGCTCTGAACCGCTCAGCTGGTGAAAATGGATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTAAAAAAAGGAACTTGTTGTGTTTGTTGTGATAGCCATATCGATTCGCTCTTGTACAGATGTGGNCATATGTGCACATGCTCAAAATGTGCCAATGAGTTATTCCGTGGCGGAGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTTCGAGCATATTCCATACTGTAAAATGGAAAGTGGAAAGGACATGGAAAAGGAAGAAAAGATCTCGAGGGAGTTAATCTCAGTTCTGGGTGTCTCGAGGTTCTTATTTATAAATGTTCAGTCTAGAAAGCCTTTGTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02183	28962	35689	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002183s00035946.1	PF13920.1	zf-C3HC4_3	801	848	1.70E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.726
SRR1783600	control	12.792
SRR1783602	moderate drought stress	15.851
SRR1811619	moderate drought stress	15.130

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.475
DRR006520	Root Summer glycyrrhizin high producing strain	16.967
DRR006521	Root Winter glycyrrhizin high producing strain	44.736
DRR006522	Root Winter glycyrrhizin high producing strain	43.986
DRR006523	Root Summer glycyrrhizin low producing strain	17.118
DRR006524	Root Summer glycyrrhizin low producing strain	16.990
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.822
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.517

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.126
SRR2868004	Drought Stress (root)	31.715
SRR2967015	Control (root)	32.384

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.288
SRR9715740	Leaf	13.862
SRR9715741	Leaf	11.652
SRR9715739	Root	4.466
SRR9715742	Root	16.988
SRR9715743	Root	15.560

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.421
SRR8749028	MeJA induced 9h	28.564
SRR8749029	MeJA induced 9h	19.552
SRR8749030	Uninduced	17.099
SRR8749031	Uninduced	24.326
SRR8749032	Uninduced	17.312

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.933
SRR8400027	Control - Root	23.789