Gene detail information of Glyur002183s00035941 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10520.1 | 9.00E-39 | haemoglobin 2 |
| NR | ABC40722.1 | 1.49E-60 | leghemoglobin 6 [Sesbania rostrata] |
| COG | YP_007169184.1 | 7.00E-06 | globin [Halothece sp. PCC 7418] |
| Swissprot | tr|P14848|LGB2_SESRO | 7.00E-62 | Leghemoglobin 2 |
| trEMBL | tr|Q2PP42|Q2PP42_SESRO | 6.00E-61 | Leghemoglobin 6 {ECO:0000313|EMBL:ABC40722.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02183 | 1681 | 15119 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002183s00035941.1 | PF00042.17 | Globin | 8 | 70 | 2.40E-09 |
| Glyur002183s00035941.1 | PF00042.17 | Globin | 115 | 217 | 2.00E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.084 |
| SRR2868004 | Drought Stress (root) | 0.051 |
| SRR2967015 | Control (root) | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 46.649 |
| SRR8749028 | MeJA induced 9h | 26.546 |
| SRR8749029 | MeJA induced 9h | 37.456 |
| SRR8749030 | Uninduced | 9.290 |
| SRR8749031 | Uninduced | 5.017 |
| SRR8749032 | Uninduced | 9.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.043 |
| SRR8400027 | Control - Root | 12.578 |