Gene detail

Gene detail information of Glyur002182s00040255

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13770.1	5.00E-161	Pentatricopeptide repeat (PPR-like) superfamily protein
NR	XP_004498165.1	0	PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q66GP4\|PP379_ARATH	0	Pentatricopeptide repeat-containing protein At5g13770, chloroplastic (Precursor)
trEMBL	tr\|A0A072VGJ5\|A0A072VGJ5_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:KEH40726.1}

Sequence

Transcript Sequence

>Glyur002182s00040255.1
ATGGCCATTTCCTGTTCTGCAGACTGGTCTCTTGCTTGCCGGATAACGCACGTGCACACATTCATCCCCACGTGCCACTTCCCTTCCTTGTANTCTGTCTCTTCCAACCCATCACGGTTCTTCCATGCAAATTTCTCAGCCTCACCCACCACACCCATCTTGGAAGAACCATCTAATTCCAATAATACCCCCACAACCCATATAGACGTTAACAATCCCCAGCAATACTCTTCCAAGCCAGAAACTGAGAACTTGAATGAGTTCCTATGCAAGCTATTTGGGGATCCAAAAACCGAGGAACTCGCATTTGACTACTACCAAAGACTGAAAGAGAGGCCAGAGTTTAGGCCAGAAAAATCAACTCTAAACCATGTGGTAAGGTACTTGTTGAGATTCAAGAAATGGGGTTTCATTTCATCACTTTCTGAAGACTTTAAGGTTTACCATGTGTTGCCTGATAGAGCCACTTGCTCTAGATTAATTAGCTTTTGCATTAAACAGAGAAAATTCAAGATTGCTGAGACCCTCCTTAATGCTTTAATTACCTCTGATAGTACTGAAGTTGTTGTTTTCGCCTTTGGTTCTGCTATGAGAAGTTATAACATGTTGCATATGTTTAGGAGCACTGTTTTAGTCTTTGAGCAAATGAAATCCAATACTTGTGTTGTTCCGGATTCAAGATGTTATTTACACATTATGGAAGCTTATTTGAGACTTGATGACTGTGAGAGAGTGGTTCAGTTGTTCAATGAATTTGAAAGTAGGAAATTAAGAGACTCAAATAGATATTTAGATAAGATATATGGGGTTCTATGTGAGTCTTTAGGGAAGTGTGGGAGAGCTTTTGAAGCACTAGAGTATTTTAGAGAGATGACTAATAAGAAAGGGGTTTCTGAGTATTCTATTTACTCTACCTTGATATGTTCTTTCGCGAGTTTGCGTGAGTTTGGTGTGGCTGAGGAACTTCTAAGGGAAGCTCAAAGCAAAACAATGATAAGGGACCCTGAGGTGTATTCAAAGCTTGTGGTTATGTATGTTGAAGAAGGATTGTTGGAGAAGACTTTGGAAGTTGTTGAGGCAATGAATGATGCTGGTGTGAAGGTTTCTGATTGTGTGCTATGTGCTGTTTTCAATGGTTTCAGCAAAAGGAGAGGGTTTTCAGCTGCTGTTAAAGTCTTTGAGAAGCTGATTTCAAAGGGATATGAACCTGGTCAAGTCACCTATGCTTCGGCGATAAACGCCTATTGCCGTCTTGGGCAATATAGCAAAGCAGAGAAGGTTTTCTCAGAGATGGAACAAAAGGGGTTTGATAAATGTGTTGTGGCTTACTCAAGCATGATTGTGATGTATGGGAAAACTGGGAGGTTAAGAGATGCAATGAGGTTGGTGGCTAAGATGAAAGAAAAGGGTTGCAAGCCAAATGTGTGGATCTACAATTCCTTGATAGATATGCATGGGAGGGTAAAGAATTTGAGGCAGATTGAGAAGGTGTGGAAGGAAATGAAGAGAAGGAAGGTAGCACCTGATAAGGTGACTTACACAAGCATCATTAGTGCTTATAGTAAGGCAGGGGAGTTTGAAACTTGTATAAGGCTTTATAATGAGTATAGGGTAAATGGTGGTTTGATTGATAAAGCCATGGCAGGTACAATGGTTGGTGTGTTCTCAAAAGTTGGTCAGGTTGATCAACTTGTGAAGCTTTTGCAGGACATGAAAATGGAAGGGACGAGGTTCGATCAGAGGCTTTACCAGTCTGCTTGGAATGCTTTTACTGAAGCTGGGTTGCAAATACAGGCAAAGTGGATGAAAGAGAGCTTCCATGTAACATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02182	6323	8152	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002182s00040255.1	PF01535.15	PPR	274	294	0.12
Glyur002182s00040255.1	PF01535.15	PPR	302	328	0.7
Glyur002182s00040255.1	PF01535.15	PPR	406	436	2.00E-08
Glyur002182s00040255.1	PF13041.1	PPR_2	438	483	1.10E-12
Glyur002182s00040255.1	PF01535.15	PPR	511	540	1.20E-05
Glyur002182s00040255.1	PF01535.15	PPR	550	575	0.49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.455
SRR1783600	control	0.589
SRR1783602	moderate drought stress	0.369
SRR1811619	moderate drought stress	0.290

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.474
DRR006520	Root Summer glycyrrhizin high producing strain	0.881
DRR006521	Root Winter glycyrrhizin high producing strain	0.061
DRR006522	Root Winter glycyrrhizin high producing strain	0.060
DRR006523	Root Summer glycyrrhizin low producing strain	0.121
DRR006524	Root Summer glycyrrhizin low producing strain	0.165
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.929
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.428

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.679
SRR2868004	Drought Stress (root)	6.254
SRR2967015	Control (root)	4.296

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.178
SRR9715740	Leaf	44.443
SRR9715741	Leaf	29.896
SRR9715739	Root	0.142
SRR9715742	Root	0.913
SRR9715743	Root	1.017

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.668
SRR8749028	MeJA induced 9h	23.234
SRR8749029	MeJA induced 9h	9.145
SRR8749030	Uninduced	12.508
SRR8749031	Uninduced	9.670
SRR8749032	Uninduced	7.629

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.330
SRR8400027	Control - Root	2.432