Gene detail information of Glyur002181s00036480 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51770.2 | 0 | tetratricopeptide repeat (TPR)-containing protein |
| NR | XP_006602082.1 | 0 | PREDICTED: ethylene-overproduction protein 1-like [Glycine max] |
| Swissprot | tr|O65020|ETO1_ARATH | 0 | Ethylene-overproduction protein 1 |
| trEMBL | tr|K7MQ77|K7MQ77_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G06680.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02181 | 25054 | 30200 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002181s00036480.1 | PF07719.12 | TPR_2 | 428 | 456 | 0.0056 |
| Glyur002181s00036480.1 | PF00515.23 | TPR_1 | 758 | 788 | 6.40E-06 |
| Glyur002181s00036480.1 | PF13414.1 | TPR_11 | 856 | 917 | 9.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.579 |
| SRR1783600 | control | 15.706 |
| SRR1783602 | moderate drought stress | 16.418 |
| SRR1811619 | moderate drought stress | 16.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.489 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.159 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.324 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.229 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.253 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.083 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.306 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 56.364 |
| SRR2868004 | Drought Stress (root) | 61.139 |
| SRR2967015 | Control (root) | 69.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.218 |
| SRR9715740 | Leaf | 4.259 |
| SRR9715741 | Leaf | 3.088 |
| SRR9715739 | Root | 0.834 |
| SRR9715742 | Root | 10.590 |
| SRR9715743 | Root | 8.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.777 |
| SRR8749028 | MeJA induced 9h | 16.421 |
| SRR8749029 | MeJA induced 9h | 4.858 |
| SRR8749030 | Uninduced | 3.767 |
| SRR8749031 | Uninduced | 2.231 |
| SRR8749032 | Uninduced | 2.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.429 |
| SRR8400027 | Control - Root | 46.852 |