Gene detail

Gene detail information of Glyur002179s00038955.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01820.1	2.00E-113	Leucine-rich repeat protein kinase family protein
NR	XP_002532551.1	0	Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
COG	YP_001958461.1	4.00E-23	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|P43298\|TMK1_ARATH	1.00E-127	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|B9T2T2\|B9T2T2_RICCO	0	Serine/threonine-protein kinase PBS1, putative {ECO:0000313\|EMBL:EEF29845.1}

Sequence

Transcript Sequence

>Glyur002179s00038955.1
ATGCAATTGAAGATAAGCACCTTCTTCAAATGTCCCTCTTCTTCTTCTTCTTCAGCTTCCACATCCCTCGCTTGCGATGATAATGACCTTGACGACTTGTCCATTTGGGAGAACAAACGACACCGTATTATCAACACTTATCGCCGAACCCGTCGGAACCCTAACACGGTTCCTTCGAAACCGGAACAGACGGTAACTGGGAAAACGTTGGTGAAGAACAAGAAGAGGAGCTATGCCCAATTCCATTTGGATTTCGGCCAATCCGATTTCCTTCTGCGCGCGTGTTCCACGTGTGGGGTTGAGTTCACTCCCGGCAATGATGAAGACGAGAAAGCCCACAAGGANTTTCACAAACGCTACACGCAAGGGATCCAATTCAGAGGCTGGACCAATGAAAGAGTTGTCCCTATGCCCAGCGTTAAAGGTGGTGGTCGAGTTATTTTGGTTTTGGATACCGACCCATCTTCTCATAGAAACAAGGTTGAAGAAGTTGTAAAGATGATGGAAATGGAGCTAGGAAGTGGGTGGATAGTTCATGAACACTGTAAGAGGATTGTTGGGTGCCTGGTTGCAGAACCAATCAAAGAAGCATTCAAAGTTGTGCCTTGCTCCATTGCCGAGGATTCTGATAGTGCAAGGAAAAAGGAANCGAAGTTGTTGCCGACCACTCTCCAGTTTGGGAATATTGTTTTTCAAAGGGAAGTNAAAAAAAGAGCCGTGACTGTGAGTGATTCTGAGGTGATGGACGGATCAGTTGGTGGGGCAATCTTCTGTGAAAGCAAACCGATTGCTGCTGTTTGTGGCATTAGAGCCATTTGGGTCACTCCCTCCAACAGAAGAAAANGCATTGCTAGCCAATTGCTAGATGCCGCGAGGAAAAGTTTCTGCNCGGGCTTTGAGCTTGAATGCGCTCGACTAGCATTCTCTCAGCCAACCTCAGCTGGAAAGGCATTAGCATTTAGTTACACGGGCACTGGATCATTCTTGGTGTATAAAGCAGAGGAATCGGGGACTAGAAACAACTGTGGAATTGGGGAGTCTCATGTCATTGAAGCTGGAAANCCCGTGATGTCAATTCAAGTTCTAAGAAATGTGACCAAGAATTTTGCCCCGGAGAATGAGATTGGCCATGGTGGATTTGGGATTGTTTATAAAGGAGAGTTGGATGACGGGACTAAAATTGCAGTAAAAAGAATGGGGCCAGGTGTGATTAGTAGTAAACCCTTGGATGAGTTCCNGGCTGAAATTGCAGTTCTATCAAAAGTCCAACATCAGCATCTAGTATCTCTTTTGGGTTATTCCATTGAAGGTAATGAGAGGATTCTGGTATATGAGTATATGCCACAAGGGGCTCTCAGTAAGCATCTTTTCCATTGGAAGAGCTTTGCACTGGAGCCCCTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATACTCTTGCTCCCCAGAGCTTCAATCACAGAGATCTTAAGTCATCAAATATTTTGCTTGATGATGATTTCAGAGCAAAAGTCTCAGATTATGGATTGGTAAAACTTGCTCCTGAAGGCGAAAAATCAGTAATAAGCCGGCTTGCTGGGACTTCTGGATACTTGGCTCCGGAATATGCAGTGACAGGAAAAATCACCACCAAATCAGTTGTTTTCAGTTTTGGGGTTGTTCTAATGGAGCTGTTGACTGGATTGATGGCACATGATGAGGATAGGCCCGAGGAAAGCAAATACCTGGCAGCATGGTTTCGGCATATTAAATCAGGTAAGAAGAAACTAATGGCTGCTATTGACCCTGTCCTTGACATAAAGGAAGAAACATTTGGGAGCATCTCCATCATTGCTGAGCTAGCTGGGCAATGCACTGCAAGAGAACCAAGCCAACGGCCAGATATGAGTCATGCTGTGAATGTTCTGGCACCNCTTGTTGAAAAATAGAAACCATTTGATGATGACGCCGAGGAGTATTTTGGNTTTGATTATAGCCTTTTTTACTAAAATCACTTTTGGGCAAAATCAATTTTGGATATCTCCATCATGCATCCAAACATGCACTTAACCAGAAGGAAGCAGAAGGAAAGAACTTGAGTTGTATATTATGGACCTAGAAGACAGTGGGANTGGTATTCCCCCTTTTTCCTGTTAATTTTTCAATAGGTGTAGATAGCACACTCTTTTCTTTATATGTCTAAAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02179	42219	46549	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002179s00038955.1	PF13878.1	zf-C2H2_3	80	120	7.70E-17
Glyur002179s00038955.1	PF13880.1	Acetyltransf_13	264	331	1.00E-27
Glyur002179s00038955.1	PF00069.20	Pkinase	373	643	2.00E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.269
SRR1783600	control	1.211
SRR1783602	moderate drought stress	1.257
SRR1811619	moderate drought stress	1.206

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.062
DRR006520	Root Summer glycyrrhizin high producing strain	1.092
DRR006521	Root Winter glycyrrhizin high producing strain	0.050
DRR006522	Root Winter glycyrrhizin high producing strain	0.036
DRR006523	Root Summer glycyrrhizin low producing strain	1.129
DRR006524	Root Summer glycyrrhizin low producing strain	0.982
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.524
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.538

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.664
SRR2868004	Drought Stress (root)	2.956
SRR2967015	Control (root)	3.578

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.920
SRR9715740	Leaf	0.928
SRR9715741	Leaf	0.915
SRR9715739	Root	0.558
SRR9715742	Root	0.625
SRR9715743	Root	0.696

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.254
SRR8749028	MeJA induced 9h	2.807
SRR8749029	MeJA induced 9h	1.418
SRR8749030	Uninduced	0.533
SRR8749031	Uninduced	0.134
SRR8749032	Uninduced	0.235

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.144
SRR8400027	Control - Root	3.226