Gene detail information of Glyur002179s00038954.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10120.1 | 1.00E-69 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_007160954.1 | 0 | hypothetical protein PHAVU_001G031300g [Phaseolus vulgaris] |
| Swissprot | tr|Q6NKN9|BH074_ARATH | 4.00E-82 | Transcription factor bHLH74 |
| trEMBL | tr|V7CU85|V7CU85_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32948.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02179 | 22700 | 26464 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002179s00038954.1 | PF00010.21 | HLH | 271 | 319 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 80.726 |
| SRR1783600 | control | 80.992 |
| SRR1783602 | moderate drought stress | 85.039 |
| SRR1811619 | moderate drought stress | 84.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.939 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.049 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.613 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.641 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.813 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.328 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.104 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 57.826 |
| SRR2868004 | Drought Stress (root) | 51.737 |
| SRR2967015 | Control (root) | 53.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.729 |
| SRR9715740 | Leaf | 8.643 |
| SRR9715741 | Leaf | 7.499 |
| SRR9715739 | Root | 11.590 |
| SRR9715742 | Root | 32.934 |
| SRR9715743 | Root | 30.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.625 |
| SRR8749028 | MeJA induced 9h | 25.868 |
| SRR8749029 | MeJA induced 9h | 38.734 |
| SRR8749030 | Uninduced | 31.110 |
| SRR8749031 | Uninduced | 4.228 |
| SRR8749032 | Uninduced | 6.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 79.727 |
| SRR8400027 | Control - Root | 93.761 |