Gene detail

Gene detail information of Glyur002179s00038953

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37750.1	3.00E-108	Integrase-type DNA-binding superfamily protein
NR	XP_007160953.1	0	hypothetical protein PHAVU_001G031200g [Phaseolus vulgaris]
Swissprot	tr\|Q38914\|ANT_ARATH	2.00E-134	AP2-like ethylene-responsive transcription factor ANT
trEMBL	tr\|V7CRX5\|V7CRX5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32947.1}

Sequence

Transcript Sequence

>Glyur002179s00038953.1
TGGAGGAGCAGATATGTGTCCTGCATGTCAAATCTAAAGCCAAGGCCCCTTCACAGCAACCTTGTGTTAAATTTTTTTTTTTTTTACCTGAGTTCATTCATTCAGTTCCGAGTCCTTTCCCATGTCCCATTCACTCTAGATATTGGCCATTTGGCCACTAGATTCAGCTACTAGCACACCACTTGCATAGCATTCAAGTTTTCAAGGCGCACACACACAGAGTACTCAGAAAAAAAAAAGGAAAAAAAACTGACCCAAAAAAGTTTATCTTATACCATTGCCACTTTTAGGGTCTTTCTTCTTATCCACTTTGACAATTTTGCTTTTGGTGTTACATGTTGGTTGATTCTGGGTTTTTTTAACACAAGGTTTAAGGACAGAAGCCAGAAATGGGGGGCGGGGGGTAGAGTTTTTTTTCTTTCTCTTTTTAAATNTTTAAGGAAAAAAAATAAAAAAGAAAAGAGGAAAAGAGAAAGCAAAAGACGTGGTCTTTCTCATATATATGTAGTACACAGATCCCTATGGAATGAAGTGGGTGCTTCCCAGTTTCCCTTACTCGNAACTCATTCTTTTTGCTTAGTTTAAAGAGACCAGTTTTGTTGTGGTTTGATACGTGAGCACATTGAACGAAAAAAGAGTTTGGTTGGTGTTTGAGAAAAAATTTCTGTAGCTAAACAACAAAAACAAACAAGTCTTCTTTCTTATAGTTTGGCAAAGAGGGTTGTGTGTTTTTTGATATGAATGATGATTTGTTTATTTGCCACCCAATGATTGNCTTGCCTTGTTGCAAGAGATACTGGTAGCAACAAGTTCAAACCATTTTTATTNAAGTAATAGCTAGAGAGGGGAAAAGATGAAGTCCATGAATGATAGCAACACTGATGATGATGGGAACAATCATAACTGGTTGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAGGCTACTACTTCTTCTGGCCCTCCCCATCCTAGTCATCATCATGAAGATCATCATCATCATGATCATCACTACTATCATCACCCCATGCCTTATTCTGCAGCACCTTCTAATTCTTCTTCTGTTGTTCCCTCAAACTTTTACCTGTCACCTTCACACCTAAACCCTTCTGGAATCTGCAGCTATGGTGTTGGGGAAAACAACAGTGCNTTTCATTCTGGTTTGGCTATGATGCCACTCAAATCTGATGGGTCCCTTTGCATAATGGAAGCTCTCACCAGATCACAAACACAAGTGATGGTGCCAAGTTCCTCTCCCAAACTTGAGGACTTTCTAGGTGGTGCAACTATGGGAGATGAAGAATATGGAGGACATGATGAAAGAGAGGCAATGGCTTTAAGCTTAGACAGCATCTACTATAGCAACAATGCAGAAGAACCTGATGAAACCAACAGAGACCATTCTTCTTCTCTGGACCTTCTTTCTGATCCTTTATTCAGGCAACAACATGGCCATGTCAGTGTCCAATCCCCACCATATTACTCAGGACTNGCTTTCCATGGGTTGTATCAACAAGCACCATTGTTGGAAGTAGAAACCAAGGAACCCCAAATGCCCCAAGTGGGAGAAGAAAGCATTGCTTGCTTCAAAAACTGGGTAATCCCAAGAGAGTATTCTATTTCTTCTGCTCAAGTTCAACATGCTTTGGAGCAGCACCATCAGCATCAGCAGCAGCAAATGAATAGTATTAGTAGTATTGGAGATGATGGTGTTGGTGGTGGTGCTTCTGGTTGTGGGGAGTTACAGTCACTGAGCCTTTCCATGAGTCCTGGTTCTCAGTCAAGTTGCATCACAGTTCCAAGTCAGATCTCACCTTCTGGGACTCATGACTCAGTGGCTATTGTTGAACCCAAAAAGAGAGGGTCTGCTAAGCTTGGTAACAAGCAACCTGTGCATAGGAAATCTATTGACACATTTGGGCAGAGAACTTCACAGTATAGAGGAGTGACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTGTGGGACAACAGTTGCAAGAAGGAAGGGCAAACCAGGAAAGGACGACAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCTTGCTGCTCTCAAGTATTGGGGACCTTCAACACATATAAACTTCCCGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAACATGACTAGGCAGGAATATGTTGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCCTCAATGTACAGAGGGGTGACAAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGCCGAGTTGCAGGAAATAGGGACCTTTATCTTGGGACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCTGCAATCAAATTCCGTGGGGGAAATGCAGTCACCAACTTTGACATATCAAGGTACGATGTTGAAAGAATCATGGCCAGCAACACCCTGCTTGCTGGTGAGCTAGCAAGAAGAAACAAGAAGAAGAAGAAGGACAATACTGAACCAAGAAGAACTGAGTCCCTAGAGTGTGAAGAAGAAGTTGAAGCTGTGAAGAACAACAACAATGAAAAAAATGGTTCAAATGGGTCCCCACAGCAACAAGAGTCAANTATATGTGACCAGAGAACTGTCAAGTGTGGAAATTATAATAGAAACTCTGCTTTCCCTTTGGCCCTACAAGATCATATCATTGGGATTGATTCTTTAGGGACTCAATTTTCAAACCCATCTTCACTGGTGACAAGTTTAAGCAGCTCAAGGGAATGCAGCCCTGATCATAAAAAGGGTCCCACATTGCTCTTTCCAAAGCCTCCTCCAATAGGGTCAAAGATTGTGAGCCCCAATATTGTTAATGCTGCTACTACTACTACTAGTGTTACTAGCTCTTGGTTTCCCTCACCATCAGCTGCTACTGCTGCTATCTCAATGTCTCCTCACTTGCCCCTTTTTGCGGCTTGGANTGATACCTAGAGAGATCATCATGGAATCATTGTCAATTGTCATGTGTTTTGAAGTTTTGTTGCATGTGAAAGGGGAAAAAGTAAGAAATAGTTGATGGGGTGGGGGTGGGGGAGAAAAAGATTGGTTTTTTTTTAGGTAACGTTGAGAATGTGTATGTGTATTTTGAAAAATGACGTTAGTGCAGGAATTTTGGGGATTAGTTATAATGGGGTGTGGGGACCATTTATCTGTCATCTTTCTGTAATCTTAGTGGAACAAGACCTTTCCAACCATAGCCTTTTGGCTCTATATANATATTGGGATGGAAAATATGCAATTGGGAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02179	652	5606	+

Gene family

Gene family	subfamily
Transcription Factors Family	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002179s00038953.1	PF00847.15	AP2	361	417	7.00E-10
Glyur002179s00038953.1	PF00847.15	AP2	462	511	1.50E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.425
SRR1783600	control	20.483
SRR1783602	moderate drought stress	28.632
SRR1811619	moderate drought stress	28.413

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.487
DRR006520	Root Summer glycyrrhizin high producing strain	6.354
DRR006521	Root Winter glycyrrhizin high producing strain	0.169
DRR006522	Root Winter glycyrrhizin high producing strain	0.165
DRR006523	Root Summer glycyrrhizin low producing strain	10.814
DRR006524	Root Summer glycyrrhizin low producing strain	10.707
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.335
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.305

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.656
SRR2868004	Drought Stress (root)	5.115
SRR2967015	Control (root)	9.235

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.054
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.200
SRR9715739	Root	2.744
SRR9715742	Root	8.305
SRR9715743	Root	7.218

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.842
SRR8749028	MeJA induced 9h	0.722
SRR8749029	MeJA induced 9h	2.422
SRR8749030	Uninduced	0.135
SRR8749031	Uninduced	0.058
SRR8749032	Uninduced	0.465

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.731
SRR8400027	Control - Root	25.942