Gene detail

Gene detail information of Glyur002177s00034175

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15000.1	4.00E-126	serine carboxypeptidase-like 50
NR	XP_004505268.1	0	PREDICTED: serine carboxypeptidase-like 50-like [Cicer arietinum]
COG	YP_002430787.1	2.00E-45	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q9M9Q6\|SCP50_ARATH	3.00E-154	Serine carboxypeptidase-like 50 (Precursor)
trEMBL	tr\|G7KEM3\|G7KEM3_MEDTR	0	Serine carboxypeptidase-like protein {ECO:0000313\|EMBL:AET00898.1}

Sequence

Transcript Sequence

>Glyur002177s00034175.1
ATGGAGAGAGAGTCAACCACCCATGGCTACAACAACCTTGTTTTCTTCTTCTTGTTACAATTACAAACCTCGCTCTCTTCAGTCTCAGATTCATCACCATCTGCTGCAAAATCAACCCATGTATTCCCCAAAGAAGCCCTTCCCACCAAATCTGGTTACCTACCAGTGAGTCCCATCACCTCCAATTCCTCCATTTTCTACACTTTCTACGAAGCCCAGAACTCCACCTCACATTCACCAAAAAAAAAGAACTCCACCTCACCTCTCTCCAAAACCCCACTTCTCATTTGGCTCCAAGGTAACCCTGGTTGCTCCTCCATGATCGGCAACTTCTACGAGCTCGGACCCTATCGTCTCACCAACAATTCCCTCACCCTTGAACCAAACCCTGGTGCTTGGAACCGAATATTTGGCCTCCTCTTTCTTGATAACCCCATCGGAACAGGTTTCAGTGTTGCCTCAACCCCACAAGAAATCCCAACTAATCAAAACGACGTCGCCAAGCACCTCTTTGCTGCTATCACCACGTTTCTTCAACTTGACCCTGTTTTCAAAAATCGCCCTATTTATATCACTGGGGAAAGCTATGCTGGGAAANATATTCCTGCAATTGGCCCTATAACACAAGTGACTACTCATGCTGCCAGTGCTTACTATGTTGGGTTGATCAATGAGAGGCAAAGGAATGAGGTTGAGAGAGCTCAATTGGAAGCTGTTGTGTTAGCCCAGATAGGGAATTGGAGTGAAGCAACGGATGCTAGAAGCAAAGCCTTGAAGGTGTTGCAAAACATGACAGGGTTGGCTACTTTGTATGACTATACAAGGAAAGCTCCCTATCAAGAGGATTTGGTTGCTCAGTTCTTGAACATTGCTGAGGTGAGGAAAGCCTTGGGGGTGAACTTTGATGAGTCATTNGTGTATGAGGTATGCAGTGGTGTAGTTGGGACTGCATTGCATGCTGATGTGATGAAGAGTGTGAAGCACATGGTGGAGAACTTGGTGAGGAGGAGTAGGGTGCTGTTGTATCAGGGTCAGCATGATTTGAGGGTTGGTGTGGTCCAAGAAGAGGCTTGGGTGAAGACAATGGAATGGGAAGGGATTGTGGAGTTTCTGAATGCTGAGAGAAAGGTTTGGAAGGTGAATGGAGAGGTTGCTGGGTATGTGCAAAATGGGAAGTCACTCACCAATGTTGTGGTTTTGGGGGCTGGACATCTTTTGCCTACTGATCAGGCTTTGAATTCTCAGGCAATGATTGAAGACTGGGTTTTGGAAAGGGGTTTGTTTGAAAGTGTGCCACAACAAGGAAATGTATATAGAAACTCTGTTTATGTTGTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02177	30888	32345	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002177s00034175.1	PF00450.17	Peptidase_S10	48	204	7.40E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.252
SRR1783600	control	9.413
SRR1783602	moderate drought stress	9.458
SRR1811619	moderate drought stress	9.276

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.007
DRR006520	Root Summer glycyrrhizin high producing strain	11.607
DRR006521	Root Winter glycyrrhizin high producing strain	2.756
DRR006522	Root Winter glycyrrhizin high producing strain	2.594
DRR006523	Root Summer glycyrrhizin low producing strain	16.206
DRR006524	Root Summer glycyrrhizin low producing strain	15.250
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.691
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.596

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.268
SRR2868004	Drought Stress (root)	16.334
SRR2967015	Control (root)	21.692

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.175
SRR9715740	Leaf	2.183
SRR9715741	Leaf	3.276
SRR9715739	Root	3.471
SRR9715742	Root	1.885
SRR9715743	Root	2.276

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.063
SRR8749028	MeJA induced 9h	0.899
SRR8749029	MeJA induced 9h	0.409
SRR8749030	Uninduced	0.117
SRR8749031	Uninduced	0.057
SRR8749032	Uninduced	0.147

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.921
SRR8400027	Control - Root	8.220