Gene detail information of Glyur002177s00034172.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56380.1 | 2.00E-51 | response regulator 17 |
| NR | NP_001236551.1 | 1.16E-95 | uncharacterized protein LOC100499827 [Glycine max] |
| COG | NP_681812.1 | 4.00E-16 | two-component hybrid sensor & regulator [Thermosynechococcus elongatus BP-1] |
| Swissprot | tr|Q9FPR6|ARR17_ARATH | 5.00E-65 | Two-component response regulator ARR17 |
| trEMBL | tr|C6SX49|C6SX49_SOYBN | 4.00E-96 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G40100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02177 | 14842 | 15917 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002177s00034172.1 | PF00072.19 | Response_reg | 29 | 148 | 2.00E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.392 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.207 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.468 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.730 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.194 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.096 |
| SRR2868004 | Drought Stress (root) | 0.328 |
| SRR2967015 | Control (root) | 0.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.606 |
| SRR9715740 | Leaf | 1.105 |
| SRR9715741 | Leaf | 0.392 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.006 |
| SRR9715743 | Root | 0.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.635 |
| SRR8749028 | MeJA induced 9h | 0.022 |
| SRR8749029 | MeJA induced 9h | 0.438 |
| SRR8749030 | Uninduced | 1.581 |
| SRR8749031 | Uninduced | 0.367 |
| SRR8749032 | Uninduced | 0.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.080 |
| SRR8400027 | Control - Root | 0.116 |