Gene detail information of Glyur002175s00041166.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51890.1 | 2.00E-48 | Peroxidase superfamily protein |
| NR | AFK46112.1 | 6.94E-70 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LT91|PER66_ARATH | 6.00E-64 | Peroxidase 66 (Precursor) |
| trEMBL | tr|I3T0S0|I3T0S0_LOTJA | 3.00E-70 | Uncharacterized protein {ECO:0000313|EMBL:AFK46112.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02175 | 42302 | 43279 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00430 | E1.11.1.7 | EC:1.11.1.7 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002175s00041166.1 | PF00141.18 | peroxidase | 41 | 131 | 2.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.818 |
| SRR1783600 | control | 2.281 |
| SRR1783602 | moderate drought stress | 1.677 |
| SRR1811619 | moderate drought stress | 1.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.357 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.375 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.040 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 50.993 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.508 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.547 |
| SRR2868004 | Drought Stress (root) | 5.027 |
| SRR2967015 | Control (root) | 4.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.142 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 6.508 |
| SRR9715743 | Root | 4.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.676 |
| SRR8400027 | Control - Root | 5.212 |