Gene detail

Gene detail information of Glyur002174s00038642

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02500.1	8.00E-176	heat shock cognate protein 70-1
NR	KDP35613.1	0	hypothetical protein JCGZ_09051 [Jatropha curcas]
COG	YP_004113662.1	8.00E-105	chaperone protein DnaK [Desulfurispirillum indicum S5]
Swissprot	tr\|P27322\|HSP72_SOLLC	0	Heat shock cognate 70 kDa protein 2
trEMBL	tr\|A0A067KKT3\|A0A067KKT3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP35613.1}

Sequence

Transcript Sequence

>Glyur002174s00038642.1
CTCGATGGACTAAAAACAAACTCTAGTGTAATTACTGTGACTAAAAATATACTCAATTTTTTTTATCCAATATTCCAATCCGCGAAATGAAGGAATCAGATAAAGTCACGGTCGCCGTTCGCCGTTCGCCAGGGATGCTTCAGATCTGCAACCGTCCAAATTCGTCAAAAACATCCAACGGCTCCTAAGAGGTTATTGGCATCCCGGAACATTCTAGAAAGAAGAATAACAAACCCTAAATCCCCAACGGCGCTACTACTCCTACTATATAAGCTCCACTCTCACAATATGTTACGCCTCTCCGCACTCAATCTCGCAACCACCCAACCTAGCTGTGGTTGAGAATCTCATATAGATCCCTCGTCGTTTTCTCATAAAACGCTACAATATGGCCGGAAAAGGAGAGGGTCCAGCTATCGGAATAGATCTCGGAACGACGTATTCGTGTGTCGGCGTTTGGCAACATGACCGCGTGGAGATCATCGCCAACGACCAGGGAAACAGAACGACGCCGTCTTATGTCGGATTCACCGACACCGAGCGTCTCATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCATCAACACCGTCTTTGATGCCAAGAGGTTGATTGGTCGTAGATTCACTGATGCCTCTGTTCAGAGTGATATGAAATTGTGGCCATTCAAGGTATTTTCTGGACCCGGTGACAAGCCAATGATTCAGGTCAGCTACAAAGGTGAAGATAAAGAGTTTGCTGCAGAAGAGATATCATCCATGCGTCAAGCTACCAAGGATGCTGGTGTTATTGCTGGTCTCAATAAGGCTACCAGTGTTGGCGAGAAGAATGTGTTGATTTTTGATCTTGGTGGCGGCACCTTTGATGTCTCTTTACTAACCATTGAAGAGGGTATCTTTGAGGTCAAGGCCACAGCTGGGGACACCCATCTTGGAGGTGAGGATTTTGACAACAGGATGGTGAACCATTTCGTTCAGGAGTTTAAGAGGAAGAACAAGAAGGATATCAGTGGCAACCCCAGAGCACTTAGGAGGTTGAGGACTGCTTGTGAGAGGGCGAAGAGAACTCTGTCATTTGAAGAGCTCAACATGGATCTCTTCCGGAAGTGTATGGAACCAGTTGAGAAGTCTGTCCATGATGTTGTACTTGTTGGTGGCTCCACCAGAATTCCCAAGGTTCAACAGCTTCTGCAAGATTTCTTCAATGGGAAGGAGCTGTGCAAGAGCATTAATCCCGATGAGGCTGTTGCATATGGCGCTGCCGTTCAGGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGGTCCAGGATCTTCTCCTTCTTGATGTAACCCCACTCTCTCTTGGGTTGGAGACTGCTGGTGGTGTGATGACAGTCCTGATCCCCCGGAACACCACAATCCCAACAAAGAAAGAACAGGTCTTCTCAACCTATTCCGACAACCAGCCCGGTGTCTTGATCCAGGACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02174	22412	25130	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002174s00038642.1	PF00012.15	HSP70	9	126	3.20E-49
Glyur002174s00038642.1	PF00012.15	HSP70	127	230	1.90E-40
Glyur002174s00038642.1	PF00012.15	HSP70	231	360	3.40E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1524.569
SRR1783600	control	1522.194
SRR1783602	moderate drought stress	1955.447
SRR1811619	moderate drought stress	1940.440

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3173.342
DRR006520	Root Summer glycyrrhizin high producing strain	3104.039
DRR006521	Root Winter glycyrrhizin high producing strain	612.075
DRR006522	Root Winter glycyrrhizin high producing strain	587.068
DRR006523	Root Summer glycyrrhizin low producing strain	2727.722
DRR006524	Root Summer glycyrrhizin low producing strain	2721.654
DRR006525	Leaf Summer glycyrrhizin high producing strain	254.172
DRR006526	Leaf Summer glycyrrhizin high producing strain	250.109

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1165.008
SRR2868004	Drought Stress (root)	995.056
SRR2967015	Control (root)	1278.274

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	306.502
SRR9715740	Leaf	311.177
SRR9715741	Leaf	425.580
SRR9715739	Root	1593.754
SRR9715742	Root	1943.815
SRR9715743	Root	1921.103

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	901.112
SRR8749028	MeJA induced 9h	533.854
SRR8749029	MeJA induced 9h	381.211
SRR8749030	Uninduced	205.049
SRR8749031	Uninduced	172.843
SRR8749032	Uninduced	583.574

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1226.601
SRR8400027	Control - Root	1257.932