Gene detail information of Glyur002170s00033270 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25690.2 | 0 | Hydroxyproline-rich glycoprotein family protein |
| NR | XP_006573276.1 | 0 | PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q9LI74|CHUP1_ARATH | 0 | Protein CHUP1, chloroplastic |
| trEMBL | tr|I1J6R6|I1J6R6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G22620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02170 | 20222 | 27005 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.524 |
| SRR1783600 | control | 2.517 |
| SRR1783602 | moderate drought stress | 2.791 |
| SRR1811619 | moderate drought stress | 2.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.476 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.500 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.548 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.557 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.833 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.723 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 188.464 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 187.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.438 |
| SRR2868004 | Drought Stress (root) | 12.726 |
| SRR2967015 | Control (root) | 4.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 296.344 |
| SRR9715740 | Leaf | 383.569 |
| SRR9715741 | Leaf | 330.485 |
| SRR9715739 | Root | 0.126 |
| SRR9715742 | Root | 1.110 |
| SRR9715743 | Root | 0.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.813 |
| SRR8749028 | MeJA induced 9h | 1.022 |
| SRR8749029 | MeJA induced 9h | 0.802 |
| SRR8749030 | Uninduced | 0.874 |
| SRR8749031 | Uninduced | 0.607 |
| SRR8749032 | Uninduced | 0.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.295 |
| SRR8400027 | Control - Root | 2.864 |