Gene detail information of Glyur002166s00038153 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45600.2 | 2.00E-29 | YEATS family protein |
| NR | XP_003517178.1 | 4.48E-46 | PREDICTED: transcription initiation factor TFIID subunit 14b-like [Glycine max] |
| Swissprot | tr|Q9FH40|TA14B_ARATH | 2.00E-35 | Transcription initiation factor TFIID subunit 14b |
| trEMBL | tr|K7K486|K7K486_SOYBN | 1.00E-46 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G37160.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02166 | 26776 | 28107 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.039 |
| SRR1783600 | control | 8.474 |
| SRR1783602 | moderate drought stress | 22.646 |
| SRR1811619 | moderate drought stress | 20.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.661 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.859 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.149 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.455 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.739 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.819 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.342 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.720 |
| SRR2868004 | Drought Stress (root) | 36.747 |
| SRR2967015 | Control (root) | 31.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.625 |
| SRR9715740 | Leaf | 17.769 |
| SRR9715741 | Leaf | 15.094 |
| SRR9715739 | Root | 4.567 |
| SRR9715742 | Root | 8.487 |
| SRR9715743 | Root | 6.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.357 |
| SRR8749028 | MeJA induced 9h | 24.851 |
| SRR8749029 | MeJA induced 9h | 11.105 |
| SRR8749030 | Uninduced | 9.921 |
| SRR8749031 | Uninduced | 4.533 |
| SRR8749032 | Uninduced | 4.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.542 |
| SRR8400027 | Control - Root | 45.481 |