Gene detail information of Glyur002165s00032070 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29690.1 | 0 | MAC/Perforin domain-containing protein |
| NR | XP_004485949.1 | 0 | PREDICTED: MACPF domain-containing protein CAD1-like [Cicer arietinum] |
| Swissprot | tr|Q9C7N2|CAD1_ARATH | 0 | MACPF domain-containing protein CAD1 |
| trEMBL | tr|I1MEX4|I1MEX4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G09440.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02165 | 24358 | 30667 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002165s00032070.1 | PF01823.14 | MACPF | 110 | 296 | 9.90E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.586 |
| SRR1783600 | control | 13.762 |
| SRR1783602 | moderate drought stress | 10.813 |
| SRR1811619 | moderate drought stress | 10.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.951 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.905 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.623 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.570 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.139 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.031 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.322 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.714 |
| SRR2868004 | Drought Stress (root) | 27.514 |
| SRR2967015 | Control (root) | 23.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.324 |
| SRR9715740 | Leaf | 40.666 |
| SRR9715741 | Leaf | 53.792 |
| SRR9715739 | Root | 14.240 |
| SRR9715742 | Root | 22.368 |
| SRR9715743 | Root | 19.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.400 |
| SRR8749028 | MeJA induced 9h | 25.677 |
| SRR8749029 | MeJA induced 9h | 23.630 |
| SRR8749030 | Uninduced | 47.800 |
| SRR8749031 | Uninduced | 22.872 |
| SRR8749032 | Uninduced | 24.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.908 |
| SRR8400027 | Control - Root | 22.795 |