Gene detail

Gene detail information of Glyur002163s00037009

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27000.1	5.00E-165	actin related protein 2
NR	XP_004516454.1	0	PREDICTED: actin-related protein 2-like [Cicer arietinum]
COG	YP_003266114.1	1.00E-41	actin/actin family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9LSD6\|ARP2_ARATH	0	Actin-related protein 2
trEMBL	tr\|A0A072U7Y0\|A0A072U7Y0_MEDTR	0	Actin-related protein ARP4 {ECO:0000313\|EMBL:KEH21940.1}

Sequence

Transcript Sequence

>Glyur002163s00037009.1
CAATTCCCTTGACTACTGGACTTTACCAACAAGTAGACCCCACCCCCTTGCTTGCAGCATTCGTACGGCAATCTTCGGTGGAAGCCAAAGTGAAACTGNAAAGCAGCAGCGACAGTTATCAAAAAAAAAAAAAAGCAGCAGCGACAGCGAGCGCAGCTGGAGAAGAAGAAGCACAGCATGGACAGCAAAAACGTCGTCGTTTGCGACAACGGAACCGGGTATGTGAAGTGTGGTTTTGCTGGGGAGAATTTCCCTACCTCCGTTTTTCCTTGTGTGGTTGGGAGGCCAATGCTCCGTTACGAAGAATCTCTCACCGAACAAGAACTTAAGGATATTGTTGTTGGGGAAGGATGTGCAGACTTGAGGCATCAGCTTGATATATCTTATCCTGTGAACAACGGAATCGTTCAAAACTGGGATGACATGTGTCATGTGTGGGATCATGCATTTTTCAATGAATTAAAAATTAACCCTCAGGACTGTAAGATTCTACTCACAGATCCGCCTCTTAATCCCTCGAAGAATCGTGAAAAAATGGTTGAGACAATGTTTGAGAAGTACAATTTTGCTGGAGTGTTTATCCAAATCCAAGCTGTTCTAACATTATATGCTCAAGGTTTGCTGACTGGATTAGTTATTGACTCGGGTGATGGTGTCACTCACGTGGTTCCAGTTGTTGATGGCTATTCATTCCCTCATCTAACGAAAAGAATGAATGTAGCTGGTCGACATATAACTGCGTATCTTGTTGATTTGCTTTCAAGGAGGGGGTATGCACTTAATAGGACTGCTGATTTTGAGACTGTTAGGGAAATCAAAGAGAAGCTATGCTACATAAGCTATGACTACAAGAGGGAATATCAGTTGGGGCTTGAGACCACTATCCTTGTTAAGAACTATACTCTTCCAGATGGAAGGGTCATTAAAGTAGGCACGGAAAGGTTCCAGGCTCCTGAGGCTCTTTTCACACCGGAGCTTATAGATGTTGAAGGTGATGGAATGGCTGACATGGTATTTCGCTGCATTCAGGAAATGGATATTGACAACTGAATGATGCTTTATCAACACATAGTTTTAAGTGGAGGGAGCACCATGTATCCTGGATTACCAAGCCGACTGGAAAAAGAAATACTTGATCGTTATCTTGATGTTGTTCTGAAGGGAAACAGAGATGGATTGAAGAAATTACGATTAAGAATTGAGGATCCACCACGAAGGAAACACATGGTTTACCTTGGAGGTGCTGTCCTTGCAGGAATAATGAAGGATGCACCAGAGTTTTGGATTAACAGGGAAGATTATCTAGAAGAAGGAATTGCTTGCCTGAGCAGGTGCGGCCAGGCTTGACTTATCGAGTTCCAGTGACCACACTTGAAAATAAGAGATCATTTCGGGAAGCAAAAGCACATCAGAGGCTGAGTGATGAATATTCAGAGCTATTAAAACTGCCTCCAACAGCTTGCATTAATTGCTGTTGGCCTTGTATAGCTGTTCCTAAACTTACTGGAGGCTAGTTGTGAAAGTACACATGCAGTCATATTTCTTGATAGATACCACAAAAGAATTCTTGTATCTTAGTTTTGCAACAAAAATTGTTGTAATTTTGTTGGCATTAAATGGTGAATAAAATATACATCGTCTGTAAATCTTAAAAAACTTTTCTTGTCCGTTTTACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02163	22575	31540	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007015 actin filament organization

GO:0034314 Arp2/3 complex-mediated actin nucleation

cellular_component

GO:0005856 cytoskeleton

GO:0005885 Arp2/3 protein complex

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002163s00037009.1	PF00022.14	Actin	2	289	6.20E-88

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.669
SRR1783600	control	6.699
SRR1783602	moderate drought stress	5.335
SRR1811619	moderate drought stress	5.300

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.920
DRR006520	Root Summer glycyrrhizin high producing strain	13.935
DRR006521	Root Winter glycyrrhizin high producing strain	8.435
DRR006522	Root Winter glycyrrhizin high producing strain	7.940
DRR006523	Root Summer glycyrrhizin low producing strain	15.308
DRR006524	Root Summer glycyrrhizin low producing strain	15.411
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.937
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.078

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.196
SRR2868004	Drought Stress (root)	21.033
SRR2967015	Control (root)	22.013

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.196
SRR9715740	Leaf	7.918
SRR9715741	Leaf	7.676
SRR9715739	Root	1.377
SRR9715742	Root	5.904
SRR9715743	Root	4.778

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.061
SRR8749028	MeJA induced 9h	22.676
SRR8749029	MeJA induced 9h	22.485
SRR8749030	Uninduced	21.820
SRR8749031	Uninduced	15.679
SRR8749032	Uninduced	15.889

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.657
SRR8400027	Control - Root	21.191