Gene detail

Gene detail information of Glyur002162s00041522

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.2	1.00E-78	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_003629291.1	0	Resistance protein [Medicago truncatula]
Swissprot	tr\|Q40392\|TMVRN_NICGU	3.00E-77	TMV resistance protein N
trEMBL	tr\|G7LC17\|G7LC17_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AET03767.1}

Sequence

Transcript Sequence

>Glyur002162s00041522.1
ATGGCTGTGCCAATATCCTCCTCCTCCTTCGGTTATGGATTCACCTACGATGTATTCCTCAGCTTTAGAGGCCAAGATACTCGCTATGGTTTTACAGCAAATCTCTACAAAGCTCTTGTTGACAGGGGAATCCACACCTTCATTGACGACGAGGAGCTTCAGAGGGGGCAGGAAATCACACCATCACTTCTTGAGGCAATTGAACAATCCAGGATTGCCATCGTTGTGCTCTCTGCTCACTATGCATCTTCTTCATTTTGCTTAGAAGAACTTGGTCGGCTGGTTTGGCCAATCTTTTATGACGTGGATCCTTCTGATGTGCGAAAGCAAACAGGATCTTATGGAGAAGCATTGGCTGTGCATAAGGAGAGGTTTAGTGATGACATGGGGAGGTTACAGAAATGGAGGATAGCTCTGCAGCAAGTAGCTAACTTGTCTGGTTGGCATTTCAAAATAGGGGATGGATATGAATACAAGCTTGTTGGGAAGATTGTCGAACATGTGTCAAGGAAGATTAACCGTGTTGCTTTACCTATTGCCGATTACCCAGTTGGACTAGAGTCTCGAGTGCTAGAAATAAATTCACTTATTGATATTGGATCTGATGATGAAGTTCTCATGGTAGGGATCCATGGAATTGGTGGAATAGGTAAAACAACACTTGCTCTTGCAGTTTATAATTTGATTGCTGACCACTTTGAAGGTTTATGTTTTCTTGAAAATGTGAGAGAAAACTCAGACAAACACGGGTTACCACATCTCCAAAAGATCCTCCTATCTGAGACACTTGGAGAGAAGAAAATTAAGTTAACAAGATCTGATTGGCTTGGTTCTGGCAGCAGGGTTATTATTACAACTCGGGATAAACATTTGTTAGCAAGACATGGAGTTACTAGAACATATGAGTTAGAGAAGTTAAACCAGCAAGATTCTCTTCAATTGCTTACTTGGAATGCTTTTAGAACAGAAAAAGTTCATCCCAGTTACTTAGATGTCTTGAATCTTGCAGTAACTTATGCTTCTGGACTTCCATTAGCTTTGGTAGTAATCGGTTCCAACTTGTATGAAAGTATTCCAAGAAAGGATATTCAAAAGATACTCAAAGTAAGCTTTGATACTTTAGATGAAGATGAGCAAAATGTTTTTCTTGACATTGCCTGTTGCTATGAAGGAACAACATATACATTGGCAGAGATTGAAGATATGCTTCGTGCTCATTATGAAATTGTTCGACAAGAATCACCCAAAGAACCTGGGAAGCGTAGTCGGTTATGGTTCCATGAAGATATAATTCAAGTTTTAGAAGAAAACACGCTGCGCTGTGGAATGTTAGGGTTATCGATTAACATTGTCATGATGCCAAAACTAGTTGAGATTATTGCTTGGGGATGGGAAGGGAGGCTATTGCCAAAACAGGACGAGGGTGAAGAAAAAGTGAGCCCAATGGTGTCTTCAAACGTAGAACGTGTTCGTCTTGCACACTGCAACCTATCAGATGAATTTCTTTCAATAGGTCTCACCTGGTTTGCTAATAAGTTAGAGGAATACCGCCAAACCTGGAATTTTTTTCTGCAATACACTGCAAATCTTGGACTTGAATTGCATGAGGCTGGAAACACCATGTTTTATGTTCCAGGAACAATAATTCCAGATTGGTTCGAGCAACATAGCAGTGGAGGGTTAATTTCTTTTTGGTTTCGTAACAAGTTCCCAGCCATATCTCTTTGTGTTGTTACTCCATCGATGTTTATCGAATCTTCAGTTTACCCCATCGTGATCATTAATGGCAATAGACGTCTCCTTGACCCTTTTAATGATCCTCAAATATGGATGCAACCAGATCATACATATATTTTTGATCTGCAAAAGATAAGATTCAAAGATAATTGGGATGAAGCACTTTTAGAAAATGAATGGAACCATGTGGAGATTTCGTTTAGTGACAAAAACATGATCCCGGTCCTTCTAGAAAGTGGAATCCATGTTTTCAAACAGAAGATCAGTAGCATGGAGGATGTTCAATTCACCAATTCCTGGAATCAAGGTGGAGGTGGGGGAGAGATGGTTGCGCAGAATCTTAGGAGTTTTCCACCTATCAAGTTGATCTCCCTGGAACAACTTGATCTTTCATTTTGCTCAAGTCTTGAGAGTTTTCCAGAAATATTAGAAAAGATGGAAAATATAACAGAGCTTGTGTTGGATGAAACTCCCATAAAAGAATTGCCACATTCATTTCAAAATCTTACTGGTCTTCAAACATTACAGCTGCGCTGTGGAATGTTAGGGTTATCGATTAACATTGTCATGATGCCAAAACTAGTTGAGATTATTGCTTGGGGATGGGAAGGGAGGCTATTGCCAAAACAGGACGAGGGTGAAGAAAAAGTGAGCCCAATGGTGTCTTCAAACGTAGAACGTGTTCGTCTTGCACACTGCAACCTATCAGATGAATTTCTTTCAATAGGTCTCACCTGGTTTGCTAATAAGTTAGAGGAATACCGCCAAACCTGGAATTTTTTTCTGCAATACACTGCAAATCTTGGACTTGAATTGCATGAGGCTGGAAACACCATGTTTTATGTTCCAGGAACAATAATTCCAGATTGGTTCGAGCAACATAGCAGTGGAGGGTTAATTTCTTTTTGGTTTCGTAACAAGTTCCCAGCCATATCTCTTTGTGTTGTTACTCCATCGATGTTTATCGAATCTTCAGTTTACCCCATCGTGATCATTAATGGCAATAGACGTCTCCTTGACCCTTTTAATGATCCTCAAATATGGATGCAACCAGATCATACATATATTTTTGATCTGCAAAAGATAAGATTCAAAGATAATTGGGATGAAGCACTTTTAGAAAATGAATGGAACCATGTGGAGATTTCGTTTAGGAATCAAGGTGGAGGTGGGGGAGAGATGGTTGCGCAGGTTAAACTAAAATCTTGGTTGTGGATCACCGGAAAAAGTTCTGTTTTCAAATACCCTGTTTCTTGTTGGCTCTCTAATCCAAGAGAATGCTTGGGTCTATAAGATGGGCGAATTGGCTTGCTATANGTGTGGGATGTATTCTCGGGTGTGACAACCATGTTAGAAGTCATGATCTTGGCTTTTTGGTAAGTGGACAAGTTGCTGGGTTTGCCTTCCTATGCTTTCTGATAATTGTCAAGATATAACCTTAGACTATCAAAACGATTGATAAAAAAGAACAAATTTTTTC

Protein Sequence

>Glyur002162s00041522.1
MAVPISSSSFGYGFTYDVFLSFRGQDTRYGFTANLYKALVDRGIHTFIDDEELQRGQEITPSLLEAIEQSRIAIVVLSAHYASSSFCLEELGRLVWPIFYDVDPSDVRKQTGSYGEALAVHKERFSDDMGRLQKWRIALQQVANLSGWHFKIGDGYEYKLVGKIVEHVSRKINRVALPIADYPVGLESRVLEINSLIDIGSDDEVLMVGIHGIGGIGKTTLALAVYNLIADHFEGLCFLENVRENSDKHGLPHLQKILLSETLGEKKIKLTRSDWLGSGSRVIITTRDKHLLARHGVTRTYELEKLNQQDSLQLLTWNAFRTEKVHPSYLDVLNLAVTYASGLPLALVVIGSNLYESIPRKDIQKILKVSFDTLDEDEQNVFLDIACCYEGTTYTLAEIEDMLRAHYEIVRQESPKEPGKRSRLWFHEDIIQVLEENTLRCGMLGLSINIVMMPKLVEIIAWGWEGRLLPKQDEGEEKVSPMVSSNVERVRLAHCNLSDEFLSIGLTWFANKLEEYRQTWNFFLQYTANLGLELHEAGNTMFYVPGTIIPDWFEQHSSGGLISFWFRNKFPAISLCVVTPSMFIESSVYPIVIINGNRRLLDPFNDPQIWMQPDHTYIFDLQKIRFKDNWDEALLENEWNHVEISFSDKNMIPVLLESGIHVFKQKISSMEDVQFTNSWNQGGGGGEMVAQNLRSFPPIKLISLEQLDLSFCSSLESFPEILEKMENITELVLDETPIKELPHSFQNLTGLQTLQLRCGMLGLSINIVMMPKLVEIIAWGWEGRLLPKQDEGEEKVSPMVSSNVERVRLAHCNLSDEFLSIGLTWFANKLEEYRQTWNFFLQYTANLGLELHEAGNTMFYVPGTIIPDWFEQHSSGGLISFWFRNKFPAISLCVVTPSMFIESSVYPIVIINGNRRLLDPFNDPQIWMQPDHTYIFDLQKIRFKDNWDEALLENEWNHVEISFRNQGGGGGEMVAQVKLKSWLWITGKSSVFKYPVSCWLSNPRECLGL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02162	10631	16815	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002162s00041522.1	PF01582.15	TIR	18	140	3.90E-26
Glyur002162s00041522.1	PF00931.17	NB-ARC	202	257	2.40E-08
Glyur002162s00041522.1	PF00931.17	NB-ARC	278	374	4.40E-12
Glyur002162s00041522.1	PF00560.28	LRR_1	703	722	1.2

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.837
SRR1783600	control	2.773
SRR1783602	moderate drought stress	2.098
SRR1811619	moderate drought stress	2.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.312
DRR006520	Root Summer glycyrrhizin high producing strain	7.049
DRR006521	Root Winter glycyrrhizin high producing strain	6.360
DRR006522	Root Winter glycyrrhizin high producing strain	6.225
DRR006523	Root Summer glycyrrhizin low producing strain	10.544
DRR006524	Root Summer glycyrrhizin low producing strain	10.922
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.924

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.242
SRR2868004	Drought Stress (root)	1.938
SRR2967015	Control (root)	2.292

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.954
SRR9715740	Leaf	1.986
SRR9715741	Leaf	3.273
SRR9715739	Root	0.040
SRR9715742	Root	1.910
SRR9715743	Root	1.279

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.051
SRR8749028	MeJA induced 9h	0.320
SRR8749029	MeJA induced 9h	0.194
SRR8749030	Uninduced	0.077
SRR8749031	Uninduced	0.074
SRR8749032	Uninduced	0.099

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.973
SRR8400027	Control - Root	3.391