Gene detail

Gene detail information of Glyur002161s00032826.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53910.2	2.00E-53	related to AP2 12
NR	XP_004510558.1	1.16E-180	PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9SSA8\|RA212_ARATH	9.00E-66	Ethylene-responsive transcription factor RAP2-12
trEMBL	tr\|Q7XAU4\|Q7XAU4_SOYBN	0	Ethylene responsive protein {ECO:0000313\|EMBL:AAQ10777.1}

Sequence

Transcript Sequence

>Glyur002161s00032826.1
AAAAAAATTGAAGACAAAAATAAAATAAGGAAAATGAAAAAAAAAATATATATATATATACATCCACCCTCTCAAGTCTCACCTCACACACCGAACTCAAAAATCATTCATTCAACAAAACCCTGTAAAAAGCATAGCCATTGAACCAAACCTGTGCCTCTATTTTTCAATTGGGTAGAAGAAAGTCTCAAACTTTTCTGCAAGGGGGGATCTGACAAGTTGTAGAGAGAGAAAGAGAGAAGATGTGTGGAGGTGCTATTATCTCCGACTTCATCCCGGCGGCGACGGGTGGTGCCCGGCGTGTGACCGCCGACATCCTGTGGCCGAATTTGAGGAAGCCGGCAAGTTCGAGGAAGCAGAAGCCAGTGCTGTTGTTGGACGATGACTTCGAAGCTGGTTTCAGAGAATTCAAGGATGATTCTGACTTCGATGAGGACGAGGATGAGTCCTTTGGTGTTAAGCCCTTTGCTTTTGGTCCCACCACCAACAACAACACCACCAAACCTGCTTCCAAGTCCATCTCTCGCGGATCAGTGACTGCAAAATCCGTGGAGTCAGATGAGCAAGCTGAGAAGCATTCTAAGAGAAAGAGGAAGAATCAGTACAGGGGGATCCGCCAGCGTCCATGGGGGAAATGGGCAGCTGAGATCCGTGACCCAAGAAAGGGAGTCCGTGTCTGGCTCGGAACTTTCAACACTGCTGAAGAAGCTGCCAGAGCTTATGATGCTGAAGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGGCTCCAGGCGCTTCCTCAAAACGCTTCAAGGCCAATCAAGAGAAGCAGCTTCTGAAGGAAAATCCTAACTCTGCCAAGCCCAAAGCGAACAACATGTTCGATTTTGGTGACAATCTGCAGGACTACTACTCCCCTATGGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGCTGACATGGGCCCCTTCCCTGGAAATGGGGTTCAGCTCTCACCCTATGATGCATCTGCTGATGTCACTGCTTATTTCAGCTCAGAGCATTCGAGCAACTCATTTGATTATTCTGATCTTGGATGGGGTGAAAAGGGCCCCAAGACACCTGAGATCTCATCCATGCTATCTGCTCCTCTGGAAGGTGAATCTCAGTTTCAGAATAACCTGCAGTCTAACTCTCAGGATCTGCCACCTGTGGAAGATGGTATCGCAAAGTCCCTCTCCGAGGAGCTTGCGGATATCGAGTCCCAGCTGAAGTTCTTTGAGACCCCATATCTTGATGAGAGCTGGACTGATGCTTCATTGGCTTCCTTGCTTGGTGGAGGAGATGCAACTCAGGATGGTGCAAACCCAATGAACCTTTGGAGCTTTGATGACCTGCCCTCCATTGGAGGCGCGGAATGCATGGTGGTCGTGGCATTGGTGATGGAATCAGAACAAACCTTACTTTTTGGGGATTTTCGGTTTGATGTTCATAAGGATTATTATTATGTTATGGATGATCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02161	2915	5889	+

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002161s00032826.1	PF00847.15	AP2	120	169	1.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	406.508
SRR1783600	control	408.230
SRR1783602	moderate drought stress	359.391
SRR1811619	moderate drought stress	356.196

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	288.611
DRR006520	Root Summer glycyrrhizin high producing strain	285.904
DRR006521	Root Winter glycyrrhizin high producing strain	582.149
DRR006522	Root Winter glycyrrhizin high producing strain	566.186
DRR006523	Root Summer glycyrrhizin low producing strain	299.638
DRR006524	Root Summer glycyrrhizin low producing strain	300.182
DRR006525	Leaf Summer glycyrrhizin high producing strain	151.595
DRR006526	Leaf Summer glycyrrhizin high producing strain	150.900

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	488.690
SRR2868004	Drought Stress (root)	730.133
SRR2967015	Control (root)	1017.857

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	396.109
SRR9715740	Leaf	386.351
SRR9715741	Leaf	513.765
SRR9715739	Root	807.800
SRR9715742	Root	806.940
SRR9715743	Root	801.887

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	173.275
SRR8749028	MeJA induced 9h	393.373
SRR8749029	MeJA induced 9h	170.430
SRR8749030	Uninduced	417.481
SRR8749031	Uninduced	168.805
SRR8749032	Uninduced	187.905

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	642.273
SRR8400027	Control - Root	640.361