Gene detail

Gene detail information of Glyur002159s00040571

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	3.00E-130	NB-ARC domain-containing disease resistance protein
NR	AES75658.2	0	NBS-LRR type disease resistance protein [Medicago truncatula]
COG	YP_007096318.1	1.00E-09	leucine-rich repeat (LRR) protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q7XA39\|RGA4_SOLBU	0	Putative disease resistance protein RGA4
trEMBL	tr\|G7KLI9\|G7KLI9_MEDTR	0	NBS-LRR type disease resistance protein {ECO:0000313\|EMBL:AES75658.2}

Sequence

Transcript Sequence

>Glyur002159s00040571.1
ATGGCTGATACTTTACTTGGAATCGTGATTGAAAACCTCGGATCTCTTGTTCGAGAGGAGCTTGCAACGTTTTTGGGTGTTGGGGAACTGACCCAAAGGCTGTCCGGAAACCTCACTGCAATCCGCGCTGTCCTCAAGGATGCTGAGGAGAGGCAAATAACGAGTCATGCTGTGAAAGACTGGTTGCAGAAGCTGAGAGATGCAGCACATGTTCTGGATGATATATTGGACGAATGTTCAATTAATGCATCCAGAGCACACCAAGACAACAAGTGCATCACCCGTTTTCATCCAAAGGAGATTTTGGCTCGTCGTGACATCGGAAAGAGGATGAAAGAGGTTGCAAAAAGGATTGATGTTATTGCTGAAGAAAGGAGAAATTTTGAATTGCATGCCGTAGGAAACAAGGAGAGTCAGCCAAAAGATGATGAATGGCGCCAAACTACCTCTGTNGTCATTGAACCGAAAGTTTATGGAAGAGACCAAGATAGAGAGCAGGTTGTCGAGCTTCTTATAAGGCATGCCAATGACCGTGAAGAACTCTCTGTTTTTTCCATTGTGGGCCATGGTGGGTATGGAAAAACAACACTTGCTCAATTGGTCTTCAACGACGAAAGGGTGACTAGCCATTTTGACTTAAAAATCTGGATTTGTGTTTCTGATGATTTCAGTATGATGAAAATTCTACAATCCATCATAGAATCTACCATTGGAAAAAATCCCGATGTCTCGTCTTTGGAATCAATGCGAAAAAAGGTTCAAGAAGTGTTACAGAGCAAAAGGTATTTACTTGTTCTTGATGATGTGTGGACTGAAGACCAAGAGAAATGGAATATGTTCAAGCATTTGCTGCAGCGTGGAAATGGAATGAAAGGTTCATCCATTTTGGTCACCACAAGACTTGAGACTGTTGCATCTATCATGGGAACTTGCCGTGCTCATCATTTGGAAGGTTTATCTGACGACCAAATTTGGCCATTGTTCAGACAACATGCTTTTGAACCAAACATGGAAGAGCGAGCAGAGCTTATAGCAATAGGCAAGGAGGTAGTGAGCAAATGTGTGGGTTCACCTCTTGCCGCCAAAGTACTAGGAAGCCTTTTGCGCTTTCAAAGTGCGGAACATCAATGGCTTTCCATAAAGGAAAGTAAACTATGGAATTTATCTGAGGATAAGGATAATCGTATCATGTCGGTTCTGAGATTGAGCTACTTTAATTTGAAACTATCACTGAGGCCGTGTTTTTCCTTTTGTGCCATTTTTCCGAAAGATTTTGTGATGGTGAAGGAAGATCTAATTCATCTTTGGATGGCGAATGGATTTATTTCATCTAGAGAAAATTTAGAGGTGGAGCATGTTGGTAACGAGGTGTGGGATGAATTACACCAAAGATCATTTTTTCAAGAAGTCAAAACTGATGAAAAAGGTAACGTTACATTCAAAATGCATGATTTAGTCCATGATCTTGCTCAGTCCATCGTGGGAGAAGAATGTGTGGCTTCTGAGACTGCAAGTTTGACTAACTTGTCACGTAGAGTTCACCATATTGCTTGCTTAGCAAATTTTGGTGAACGATTGAACTACAAATCAGTCCCTTTCAAGAAAGTTGAATCCTTGCGAACCTTTCTTGAGTTCAATCCACCCCACCCAAGTTTAGGTGCATTGCCATCAATTAGTCCTCTTCGGGCATTATGTACTAGTTCTTCTCGACTCTCAACACTGAAGAATTTAACTCATTTGAGGTACTTGGAACTTTACGAGAGTTACATCACAACCCTGCCTGAGTCTATTTGTGGGCTGAAGAAATTGCAAGTACTAAAACTAGTATCTTGTTATGATCTTTCTAGCCTTCCCAAAGATTTGATACATTTACATGATCTCAGGCATCTCGTGATTAAAAATTGTGGGTCATTAGTATCAATGCCTTCCGAAATTGGGCAGCTAACTTGTCTGAAAACATTAAGTATTTTCANTGTGGGTTCGGAGGAGGGGTTTGGTTTAGCAGAGTTACGTGACTTACAGCTAGGCGGCAAGCTACACATCAAAGGCCTTGAGAATGTGCCCAGTNATTCGGATGCCAGAGAAGCTAATTTGATTGGCAAAAGGGAGTTGAATCGCTTATACTTGACATGGGGTAGTGATGCTAGTTCACAAGCTAATGCTGAGCAAGTACTCGAAACCCTTGAGCCTCACTCGGGTCTCAAGGCTTTTGGGATCAATGGTTATGGGGAAATACATTTTCCCCATTGGATGAGAAACACTTCTATTATGAAAGGCTTAGTTGAACTTATACTCTGCAACTGTAAAAATTGTCAGCATCTTCCTCCACTTGGTAAACTGCCATGTTTAACCAGTCTTTATATATCTGGAATGAGAGATGTAAAATACATCGATGATGACTTATACGAACCTACTACCGAGAAGGCTTTTATGTCGTTGAAGACGTTGAATTTGCATGATTTACCAAAATTAGAGAGGATGTTGGAAGCCGAAGGAGTAGAGATGCTACCACAACTTTCAAACTTACATATTTCAGGTGTCCCCAAGCTTGCATTGTCATCCCTTCCGTCTGTTGAGGTCCTTGATGCTCGTGGCCAATACAATGAAGACATGGCTTCCTTCCCAGGGGAAATGATGTGTAACATGCATAATCTTAAGAAACTTTTAATTCAACACTTCAAAAAACTCAAGGTATTATCTGATGGATTCAGCACTCTTGGTGCCCTAGAGGAACTTTACATTAACCATTGTGGTGAACTTGAGTCTTTTCCGGAGCATGTGTTGCAAGGTCTAAGTTCTCTTCGAAAATTGGCCATTCATTATTGTTCTAAACTCAAGTCTTTGTCCGAAGGTGTGGGACACCTAACTCGTCTTGAGAGTCTTACAATCGAGTGTTGTCCACTACTCGTTTTACCAAGCAATATGAATAGGCTAACTGCCCTTCATGATGTGACAATCGTGGGAAAGAGTAAAATCGACAAGTTACCAGAGGGCTTAGAACATATCTCCTCCATGCAAATCTTGACTCTATTACGCTTTCCTTCTCTAACATCCTTGTCGGACCGGTTGGGAACCATCACTTCTCTTCAAAAATTACAAATCATTGGGTGTCCCGAGTTAAGTTCGTTACCGGATAGCTTTCAACAACTCAGAAACTTGCGTGAATTACATATTTCTGGATGCCCTAAGCTGGTGAAGAGATGTAGCAGGGGAACAGGGGAAGATTGGCATAAGATAGCTCACGTTCCTGAATTGGAATTGGAGCAAGTGAAGGAACCGACTTCTTGTGAGAAAATCATTTATGCACGGGGGAAGAAGTCAAAGAAATTATTTACCTCTGGCCTGGACTTTTGGAGATCGGTTCCCTTCGATAGATTTAATGACATGGTTCTCTGCGATTGGAACTTTATAGTTCTATTCGATGTATTTTGTGAGTTGCAAAGATTTGGGGTCCGACCAATAGATTTTTGCGATCAACACACTTGTGTGAGCTGTGAGGTGGGCACTCAGAATTTCAAGTTCATTATCATCAAAGGGTGTGATTTTCAGAATCCTTGCTTACAG

Protein Sequence

>Glyur002159s00040571.1
MADTLLGIVIENLGSLVREELATFLGVGELTQRLSGNLTAIRAVLKDAEERQITSHAVKDWLQKLRDAAHVLDDILDECSINASRAHQDNKCITRFHPKEILARRDIGKRMKEVAKRIDVIAEERRNFELHAVGNKESQPKDDEWRQTTSVVIEPKVYGRDQDREQVVELLIRHANDREELSVFSIVGHGGYGKTTLAQLVFNDERVTSHFDLKIWICVSDDFSMMKILQSIIESTIGKNPDVSSLESMRKKVQEVLQSKRYLLVLDDVWTEDQEKWNMFKHLLQRGNGMKGSSILVTTRLETVASIMGTCRAHHLEGLSDDQIWPLFRQHAFEPNMEERAELIAIGKEVVSKCVGSPLAAKVLGSLLRFQSAEHQWLSIKESKLWNLSEDKDNRIMSVLRLSYFNLKLSLRPCFSFCAIFPKDFVMVKEDLIHLWMANGFISSRENLEVEHVGNEVWDELHQRSFFQEVKTDEKGNVTFKMHDLVHDLAQSIVGEECVASETASLTNLSRRVHHIACLANFGERLNYKSVPFKKVESLRTFLEFNPPHPSLGALPSISPLRALCTSSSRLSTLKNLTHLRYLELYESYITTLPESICGLKKLQVLKLVSCYDLSSLPKDLIHLHDLRHLVIKNCGSLVSMPSEIGQLTCLKTLSIFXVGSEEGFGLAELRDLQLGGKLHIKGLENVPSXSDAREANLIGKRELNRLYLTWGSDASSQANAEQVLETLEPHSGLKAFGINGYGEIHFPHWMRNTSIMKGLVELILCNCKNCQHLPPLGKLPCLTSLYISGMRDVKYIDDDLYEPTTEKAFMSLKTLNLHDLPKLERMLEAEGVEMLPQLSNLHISGVPKLALSSLPSVEVLDARGQYNEDMASFPGEMMCNMHNLKKLLIQHFKKLKVLSDGFSTLGALEELYINHCGELESFPEHVLQGLSSLRKLAIHYCSKLKSLSEGVGHLTRLESLTIECCPLLVLPSNMNRLTALHDVTIVGKSKIDKLPEGLEHISSMQILTLLRFPSLTSLSDRLGTITSLQKLQIIGCPELSSLPDSFQQLRNLRELHISGCPKLVKRCSRGTGEDWHKIAHVPELELEQVKEPTSCEKIIYARGKKSKKLFTSGLDFWRSVPFDRFNDMVLCDWNFIVLFDVFCELQRFGVRPIDFCDQHTCVSCEVGTQNFKFIIIKGCDFQNPCLQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02159	31120	35697	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002159s00040571.1	PF00931.17	NB-ARC	161	445	3.10E-71
Glyur002159s00040571.1	PF13855.1	LRR_8	909	968	2.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.240
SRR1783600	control	6.413
SRR1783602	moderate drought stress	6.507
SRR1811619	moderate drought stress	6.644

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.334
DRR006520	Root Summer glycyrrhizin high producing strain	2.321
DRR006521	Root Winter glycyrrhizin high producing strain	0.576
DRR006522	Root Winter glycyrrhizin high producing strain	0.517
DRR006523	Root Summer glycyrrhizin low producing strain	0.840
DRR006524	Root Summer glycyrrhizin low producing strain	1.253
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.453
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.497

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.767
SRR2868004	Drought Stress (root)	1.174
SRR2967015	Control (root)	0.893

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.283
SRR9715740	Leaf	0.451
SRR9715741	Leaf	0.234
SRR9715739	Root	1.113
SRR9715742	Root	3.869
SRR9715743	Root	3.048

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.460
SRR8749028	MeJA induced 9h	1.120
SRR8749029	MeJA induced 9h	0.145
SRR8749030	Uninduced	0.398
SRR8749031	Uninduced	0.075
SRR8749032	Uninduced	0.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.297
SRR8400027	Control - Root	14.758