Gene detail

Gene detail information of Glyur002157s00034199.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G24503.1	aldehyde dehydrogenase 2C4
NR	XP_003528912.1	PREDICTED: aldehyde dehydrogenase family 2 member C4-like isoform X1 [Glycine max]
COG	YP_007058635.1	NAD-dependent aldehyde dehydrogenase [Rivularia sp. PCC 7116]
Swissprot	tr\|Q56YU0\|AL2C4_ARATH	Aldehyde dehydrogenase family 2 member C4
trEMBL	tr\|I1KIS3\|I1KIS3_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G09640.1}

Sequence

Transcript Sequence

>Glyur002157s00034199.1
CCCAACTGGTTAATTTGTCGGTCTCTATAGCCTTTGTGTGTGTGTGTGTGTGTGTGTCTATATAAAAAGAAAGTTCCCCATTCCCAATTCTTAGAAATCAAAAGGCCCGAAAACTTCCGCAAGTTGCTCCTTGTTGTCCCCTAGTAGTATAATTGGGTCTCTCTATCTACCTTGTTTGCCAGACACACACAAAGATGACAGGTTTCTCCAATGGCCACGCTGGTTCCTCCATCGAGATCCCCACCATCAAGTTCACCAAGCTCTTCATCAATGGAGAATTCGTTGATTCCCTCTCAGGAAAAAAATTTGAGACAATAGATCCAAGGACAGGAGAGGTGATTGCGAGGATCGCAGAGGGAACAAAAGAAGACATNGATGTCGCTGTGAAAGCGGCACGTGTCGCTTTCGACGAAGGTCCATGGCCTCGCATGCCCGGCGNTGNAAGAGCAAAAATTCTGATGAAATGGGCAGAGCTAATTGATCAAAACGTGGAAGAATTAGCAGCACTAGATGCCATAGATGCTGGGAAATTGTACCATTGGTGCAAGGCTATTGACATTCCTTCAGTAGCAAATACTATACGTTACTATGCAGGTGCTGCTGATAAAATCCATGGAGAGGTATTGAAACCATCTCGGGAGTTGCATGCATATACTTTGATGGAACCAATTGGTGTTGTGGGACACATCATTCCTTGGAATTTCCCTAGCACCATGTTTGTTGCCAAGACTTCTCCTTCCTTGGCTGCTGGTTGCACAATGGTCCTTAAGCCTGCTGAACAAACTCCTCTCTCAGCTTTGTTTTATGCTCATCTTGCTAAGCTGGCTGGAATTCCAGATGGGGTGCTCAATGTAGTACCTGGCTTTGGTGCAACTGCAGGTGCTGCAATAAGCTCACACATGGACATTGATAAGGTGAGTTTTACTGGTTCAACAGAAGTAGGCCGTGAAATAATGCAAGCTGCAGCTAGGAGTAATTTGAAACCAGTTTCACTTGAATTAGGAGGCAAGTCACCCCTCATAGTTTTTGATGATGCTGATGTGAATAAAGCTGCTGAGCTTGCTCTCTTGGGCATTGTATTTAACAAGGGAGAAATTTGTGTTGCTGGTTCCCGTGTATTCGTTCAGGAAGGAATCTATGATGAATTTGAGAAGATGTTGGTTGAGAAAGCAAAAGCTTGGGTTGTTGGTGATCCTTTTGATCCTAAAGTTCAACAAGGGCCACAGGTTGACAAGAGGCAATTTGAAAAAATTCTTTCCTATATTGAGCATGGAAAGAAAGAAGGGGCCACCCTTTTGACAGGTGGTAAGAGAGTGGGAAACAAGGGTTACTACATTGAGCCTACAATTTTCTCTAATGTTAAGGAGGACATGCTTATAGCAAAGGATGAAATATTTGGCCCTGTGATGGCACTGATGAAGTTTAAGACAATTGAGGAAGCAATTAAAAGTGCCAACAATACCAGATATGGCCTGGCAGCAGGCATTGTGACCAAGAGCTTGGATACAGCAAACACTGTGTCAAGGTCCATTCGTGCAGGCATTGTTTGGATTAACTGCTACTTTGCATTTGGGAATGACATTCCTTATGGAGGGTACAAGATGAGTGGGTTTGGAAGAGACTTTGGATTGGAAGCACTACATAAGTACTTACAAGTTAAATCTGTTGTAACTCCCATTTACAATTCCCCTTGGCTTTGAATGTATTCTGTCTGTGTTTTGTGTTTGTAAACAACAGTGAGTGAGTGAGAGAACAATGATTGAACTTTTACATGTATACTTCATCATATCACAACAATAAAATTAGAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02157	38333	46300	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12355	REF1	EC:1.2.1.68	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002157s00034199.1	PF00171.17	Aldedh	30	491	3.40E-177

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.519
SRR1783600	control	4.544
SRR1783602	moderate drought stress	4.297
SRR1811619	moderate drought stress	4.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.155
DRR006520	Root Summer glycyrrhizin high producing strain	2.246
DRR006521	Root Winter glycyrrhizin high producing strain	0.671
DRR006522	Root Winter glycyrrhizin high producing strain	0.584
DRR006523	Root Summer glycyrrhizin low producing strain	1.157
DRR006524	Root Summer glycyrrhizin low producing strain	1.135
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.658
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.301

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	151.212
SRR2868004	Drought Stress (root)	207.053
SRR2967015	Control (root)	134.870

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.792
SRR9715740	Leaf	41.818
SRR9715741	Leaf	35.306
SRR9715739	Root	13.832
SRR9715742	Root	13.242
SRR9715743	Root	14.687

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.292
SRR8749028	MeJA induced 9h	54.311
SRR8749029	MeJA induced 9h	72.495
SRR8749030	Uninduced	132.713
SRR8749031	Uninduced	208.991
SRR8749032	Uninduced	112.537

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	63.057
SRR8400027	Control - Root	48.341