Gene detail information of Glyur002157s00034198 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24500.1 | 3.00E-59 | multiprotein bridging factor 1C |
| NR | AAL32037.2 | 3.82E-87 | ethylene-responsive transciptional coactivator-like protein [Retama raetam] |
| COG | YP_003986419.1 | 3.00E-06 | hypothetical protein HMPREF0421_21314 [Gardnerella vaginalis ATCC 14019] |
| Swissprot | tr|Q9LV58|MBF1C_ARATH | 8.00E-75 | Multiprotein-bridging factor 1c |
| trEMBL | tr|Q8S4Q2|Q8S4Q2_9FABA | 1.00E-87 | Ethylene-responsive transciptional coactivator-like protein {ECO:0000313|EMBL:AAL32037.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02157 | 36306 | 36746 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MBF1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002157s00034198.1 | PF08523.5 | MBF1 | 11 | 81 | 8.10E-26 |
| Glyur002157s00034198.1 | PF01381.17 | HTH_3 | 89 | 140 | 1.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.132 |
| SRR1783600 | control | 8.076 |
| SRR1783602 | moderate drought stress | 5.630 |
| SRR1811619 | moderate drought stress | 8.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 57.507 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 57.613 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.721 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.466 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.247 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.805 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.487 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.512 |
| SRR2868004 | Drought Stress (root) | 25.534 |
| SRR2967015 | Control (root) | 15.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.006 |
| SRR9715740 | Leaf | 15.485 |
| SRR9715741 | Leaf | 10.021 |
| SRR9715739 | Root | 13.320 |
| SRR9715742 | Root | 33.236 |
| SRR9715743 | Root | 31.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 135.900 |
| SRR8749028 | MeJA induced 9h | 105.667 |
| SRR8749029 | MeJA induced 9h | 99.555 |
| SRR8749030 | Uninduced | 44.882 |
| SRR8749031 | Uninduced | 12.984 |
| SRR8749032 | Uninduced | 82.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.801 |
| SRR8400027 | Control - Root | 39.088 |