Gene detail

Gene detail information of Glyur002157s00034197

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24495.1	0	MUTS homolog 7
NR	XP_004512965.1	0	PREDICTED: DNA mismatch repair protein MSH7-like [Cicer arietinum]
COG	YP_001917667.1	1.00E-69	DNA mismatch repair protein MutS [Natranaerobius thermophilus JW/NM-WN-LF]
Swissprot	tr\|Q9SMV7\|MSH7_ARATH	0	DNA mismatch repair protein MSH7
trEMBL	tr\|G7KNH7\|G7KNH7_MEDTR	0	DNA mismatch repair protein msh6 {ECO:0000313\|EMBL:AES76731.2}

Sequence

Transcript Sequence

>Glyur002157s00034197.1
ATGAATCCTCAGAGTCAGAAATCCATACTCTCATACTTTCAGAAGACCGCGCCGGAAAACCGCAGCTCCGGCGGTGGGCGAGCCTCCGGTCCGTCGGTTCAGCAAGCCAACCGTAATGTCACGGCAGTCTTCAATCCACCGCCGTCGGCCGATGATGTCAGAGGAANTGATACGCCGCCGGAGAAGGTGCCGCGTCAGGTTCTGCCGGCGAGCTTCGCAACAAACGCTAACAATAGCTCCGGCTCGTCCCTGTTTGAGAGCATCATGCACAAATTCGTCAAGGTCGATGATAGCGAAAGAGTTAGTCACAAGATCCAGTCATCAAATGNTAGCTTCCCAAAATCTTCACCGTCACCAGCTATATTTACTGATACTAACCGTAAAGGGCTGCAGAAAGAAGCAGCAGCTTTTGAACCCGTGGCGAAAGTGAAAGATAATGCTGTAAGTTTCAATGAAAAGTCTAACCAGGAGAAGATGGCCCTGGTTGAAAATGAAGACGATATTGCTGGACCAGAAACCCCAGGGATGCGGCCTCTTGCTTCTCATGTAAAGCGAAGTCTAGAGGACGGGTCCAAGTTTTGTTCCTTGCGGGATTCTAGCAAACGAGTCAGATTCCTTGAGGATTCAACAGCACTGGACATCACTCAGAAGGAAGTAGAAGTGGCTAGCAAGTTTGAGTGGCTTGATCCTTCTCGAATCAGGGATGCCAGTGGAAGAAGGCCCAATGATCCTTTATATGACAGGACGACGCTTTATATACCTCCGGAGGTTTTGAAAAAAATGTCAGCATCGCAGAAACAGTATTGGAGTGTCAAATGCAAATATATGGATGTTGTGCTATTCTTTAAAGTGGGGAAGTTTTATGAGCTTTATGAAATGGATGCTGAAATTGGCCATAAGGAGCTTGATTGGAAAATAACATTTAGCGGTGTGGGAAAATGTCGGCAGGTTGGTATATCTGAAAGTGGGATTGATGNTGCTGTTCGAAACCTGGTTGCTCGTGGATATAAGGTTGGACGAGTGGAGCAGTTGGAGACATCTGAAGAAGCAAAAGCTAGAGGATCTAACTCTGTTATCATGAGAAAATTAGTTCAGGTAGTCACTCCATCAACCAATGTGGATGATAATATTGGACCTAACACAGAGAACAATGGCTTGGATAATGGTTCAGTTATGTATGGATTTGCTTTTGTTGATTGTGCTCGTCTTAGTTTTTGGGTTGGTTCTATTGATGATGATGCATCCTGTTCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCCAAGGAAATTATATATGAAAGCAGAGGTTCCACAACACTGCAGTTGACTCCAGTGCAGTCGATCACTGACTTGGTGAACTCAGAAATTAGTGATTTAATTCACTCAAAGGGGTACTTCAAGGGGTCGTCTCATTCACTGGATCATGTGCTGAGCAAAGTGAATCATCGTGAAATCACCTTGTCTGCTCTTGGTGGACTGATTGGTCATCTAGATAGATTGATGCTNGATGATATCCTAAAGAATGGGGATATATATCCATACCAACTTTATAAGGGTTGTCTCAAAATGGATGGTCCGACATTCATAAATCTAGAAATCTTTGGCAATAATGAGGATGGTACGTTATACAAATATCTTGATAACTGTGTGACATCATCTGGAAAGCGGCTTCTTAGGAACTGGATCTGCTGTCCATTGAAAGATGCTGATGGAATTAATAACAGGCTTGATGTGGTGGATGATCTAATAGCTTGCCCAGCAATTGTGTCATGTATTGCTCAACATCTTCGCAAGCTTCCGGATTTGGAACTATTGCTAGGCCGTATTAAGTCCAGCCTTCAATTATCAGGCCCTCTCTTATTGGCCTTTTTGGGAAAGAAAATATTGAAGCAGAGGGTGAAAATTTTTGGGTCACTTGTGAAAGGCCTTCGGACTGCTTTAAGCTTGTTGCTTCTACTACAGAAAGAGCAGCCTCTAATATCATCCTTAACCAAAGTTTTTAAACTTCCAATTCTGACCNGCAGTAACGGGCTAGATCAATTTCTTACTCAGTTTGAAGCAGCTGTAGATAGTGACTTCCCAAATTACCAGAATCATGATGTTACAGATTCAGATGCTGAAACACTCACAATACTTACTGAGTTATTTTTGGAGAAAGCTGCTCAATGGGTTGAAGTTATTCACGCCATCAATTGTATTGACGTACTAAGATCTTTTGCTGCCACTTCTAGCTTTTCATGTGGAACTATGTCTAGGCCTGTCATAGTGCCAGCATTGAAAAATACAAGTAAAGACAGTGGAGGACCTGTGCTCAAAATGAAGGGANTATGGCATCCATTTGCCCTTGGTGAGAGTGGATGTTTGCCTGTTCCGAACGATATAATCCTTGGTGGGAATGAAGACGGGCATCATCCTCGCACGTTGCTGCTGACAGGACCAAACATGGGTGGAAAGTCAACACTTTTGCGGGCTACCTGTCTAGCCGTTATTATGGCCCAGCTAGGCTGTTACGTACCGTGTGAAAATTGTGTTNTCTCAGTTGTGGATATCATATCCACACGGCTTGGAGCTACAGATAGAATCATGGCAGGCGAGAGTACCTTCTTTATTGAGTGTGCAGAAACTGCATCGCTGCTTCAGAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTATGCCATTGCATATGCTTTTGCATCTCATCCTCGTGTTACAATGCAACACATGGCTTGTGCTTTCAAGTCAAAATCTGATACCTATTCCAAACATGATCAGGAGCTAGTCTTTCTATATCGTCTTGCTTCTGGACCATGTCCAGAGAGTTACGGGTTGCAGGTTGCCCTCATGGCTGGAATCCCAGAAAAAACTGTAAACATTGCTTCAAAGGCTAGCCANCAGATGAAAAAATCAATTGGGAAAAGCTTTAGGTCATGTGAACAGAGATCAGAGTTCTCAACTCTTCATGAAGAATGGTTGAAGACCTTGGTGTCTATCTCACGAATGGATGATTGTAAATCTTTTGATGATGATGTTTTAGATACATTAGTCTGTTTGTGGTATGAACTAAAAACTTCATTTAGATCTGGCAACTAG

Protein Sequence

>Glyur002157s00034197.1
MNPQSQKSILSYFQKTAPENRSSGGGRASGPSVQQANRNVTAVFNPPPSADDVRGXDTPPEKVPRQVLPASFATNANNSSGSSLFESIMHKFVKVDDSERVSHKIQSSNXSFPKSSPSPAIFTDTNRKGLQKEAAAFEPVAKVKDNAVSFNEKSNQEKMALVENEDDIAGPETPGMRPLASHVKRSLEDGSKFCSLRDSSKRVRFLEDSTALDITQKEVEVASKFEWLDPSRIRDASGRRPNDPLYDRTTLYIPPEVLKKMSASQKQYWSVKCKYMDVVLFFKVGKFYELYEMDAEIGHKELDWKITFSGVGKCRQVGISESGIDXAVRNLVARGYKVGRVEQLETSEEAKARGSNSVIMRKLVQVVTPSTNVDDNIGPNTENNGLDNGSVMYGFAFVDCARLSFWVGSIDDDASCSALGALLMQVSPKEIIYESRGSTTLQLTPVQSITDLVNSEISDLIHSKGYFKGSSHSLDHVLSKVNHREITLSALGGLIGHLDRLMLDDILKNGDIYPYQLYKGCLKMDGPTFINLEIFGNNEDGTLYKYLDNCVTSSGKRLLRNWICCPLKDADGINNRLDVVDDLIACPAIVSCIAQHLRKLPDLELLLGRIKSSLQLSGPLLLAFLGKKILKQRVKIFGSLVKGLRTALSLLLLLQKEQPLISSLTKVFKLPILTXSNGLDQFLTQFEAAVDSDFPNYQNHDVTDSDAETLTILTELFLEKAAQWVEVIHAINCIDVLRSFAATSSFSCGTMSRPVIVPALKNTSKDSGGPVLKMKGXWHPFALGESGCLPVPNDIILGGNEDGHHPRTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVXSVVDIISTRLGATDRIMAGESTFFIECAETASLLQNATQDSLVILDELGRGTSTFDGYAIAYAFASHPRVTMQHMACAFKSKSDTYSKHDQELVFLYRLASGPCPESYGLQVALMAGIPEKTVNIASKASXQMKKSIGKSFRSCEQRSEFSTLHEEWLKTLVSISRMDDCKSFDDDVLDTLVCLWYELKTSFRSGN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02157	22327	30133	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006298 mismatch repair

molecular_function

GO:0005524 ATP binding

GO:0030983 mismatched DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002157s00034197.1	PF01624.15	MutS_I	264	375	4.50E-32
Glyur002157s00034197.1	PF05188.12	MutS_II	389	505	3.50E-09
Glyur002157s00034197.1	PF05192.13	MutS_III	528	741	1.30E-32
Glyur002157s00034197.1	PF00488.16	MutS_V	764	981	2.00E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.353
SRR1783600	control	1.350
SRR1783602	moderate drought stress	1.003
SRR1811619	moderate drought stress	0.896

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.185
DRR006520	Root Summer glycyrrhizin high producing strain	1.103
DRR006521	Root Winter glycyrrhizin high producing strain	0.542
DRR006522	Root Winter glycyrrhizin high producing strain	0.560
DRR006523	Root Summer glycyrrhizin low producing strain	0.622
DRR006524	Root Summer glycyrrhizin low producing strain	0.590
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.297
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.296

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.649
SRR2868004	Drought Stress (root)	3.371
SRR2967015	Control (root)	3.723

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.107
SRR9715740	Leaf	0.675
SRR9715741	Leaf	0.647
SRR9715739	Root	0.307
SRR9715742	Root	0.975
SRR9715743	Root	0.915

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.907
SRR8749028	MeJA induced 9h	3.369
SRR8749029	MeJA induced 9h	2.313
SRR8749030	Uninduced	0.478
SRR8749031	Uninduced	0.324
SRR8749032	Uninduced	0.788

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.034
SRR8400027	Control - Root	4.219