Gene detail

Gene detail information of Glyur002155s00036300.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G24590.1	8.00E-11	DORNROSCHEN-like
NR	XP_003613106.1	8.09E-93	AP2/ERF domain-containing transcription factor [Medicago truncatula]
Swissprot	tr\|Q9FYK5\|ESR2_ARATH	7.00E-36	Ethylene-responsive transcription factor ESR2
trEMBL	tr\|G7JXS9\|G7JXS9_MEDTR	3.00E-93	AP2 domain class transcription factor {ECO:0000313\|EMBL:AES96064.1}

Sequence

Transcript Sequence

>Glyur002155s00036300.1
ATGGAGGAAGCACTAAGGCGTCTTAACGGAACCACGGCACCGATTTCGGAACCCGGCCCGCCGGTATCCGAACCGAAGAAGTCCACCGCCAACAAGAGGGCGCTGCGGGAGAACAACGGCAACGGCGGAAACGGAGGGGCGATGAGGTACCGCGGCGTACGGCGTAGGCCGTGGGGCCGTTACGCGGCGGAGATAAGGGACCCACAGTCGAAGGAGCGTCGGTGGCTTGGAACCTTCGACACGGCGGAGGAAGCAGCGTGTGCCTACGATTGCGCCGCACGTGCGATGCGTGGCCTCAAAGCTCGCACAAACTTCGTCTACCCAACTTCACCGCCTCACCCTTCCTCCACCACACAACAACAACAACAACAGTACCTTTTCCCTCCCTTCAACTTCCCCAACAACAAGCATTCTCGTTCTCATTCTCATTCTCATTCTCAACCTTTCAACAAATCCACACTCAACCGCCACGTGTCCTGTTTTCCATCTTGCTCTGACGTTATTGACTTAAACCACCACCACCGAAACCCTTCTAATTCCCTCGACATGCTCCTCTTCCGCGAATTCCTCAACCCTTCACCTCAGCAGTTCCACGACCAGTTATTATCCTACAACAACAAAGGTAGTAGTAGTTGTTGTTCCACTTGTCTCCCAGGTTGTTGTTTGGTGAATTCATGTGTTAATAGCACCACCTTGTGTGGTGGCTCTTCTAATTCCCTTCAGATGAACAACAACACCGACAACACTACCGTTGGGAATAATGAAGAGTACTCGGGAGATAGTGAACAGTTGGTTGTTCCTGCGCCTGTGTCTGATCATCACACCACGCTCGTTCCTCCCACTGGGCAATGTTATGTTGAGGCCAAGAAGGGGGTTTCAAGGAACGAGGGTTTTGGAGGTGTCTCTTTTGATCACCACCATCAACAAGGCTTCACCATGCAGCAACTTGACGCTTTTAATGGGTTCAATTCCGTGCCTTTGGGGAATGAACAGCAGCTCCTGATGAATCATCATGCGGAGAATTCTGTCCTTGGAGATTTTCTTCACTACCAAGAGCTTCTTAATGCTTTTGCACTCAGGATGCAAAATGCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02155	42333	43547	-

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002155s00036300.1	PF00847.15	AP2	49	98	4.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.032
SRR1783600	control	0.095
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.012
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.026

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.486
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.119
SRR9715739	Root	0.000
SRR9715742	Root	0.331
SRR9715743	Root	0.218

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.863
SRR8749028	MeJA induced 9h	1.947
SRR8749029	MeJA induced 9h	10.334
SRR8749030	Uninduced	0.871
SRR8749031	Uninduced	1.715
SRR8749032	Uninduced	4.848

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.103
SRR8400027	Control - Root	0.323