Gene detail

Gene detail information of Glyur002155s00036298

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10500.1	2.00E-47	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	KHN14530.1	4.17E-153	Flavonol synthase/flavanone 3-hydroxylase [Glycine soja]
COG	YP_005435847.1	4.00E-26	2OG-Fe(II) oxygenase family oxidoreductase [Rubrivivax gelatinosus IL144]
Swissprot	tr\|Q9ZWQ9\|FLS_CITUN	3.00E-53	Flavonol synthase/flavanone 3-hydroxylase
trEMBL	tr\|I1J533\|I1J533_SOYBN	2.00E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G03120.2}

Sequence

Transcript Sequence

>Glyur002155s00036298.1
ATGATGCCCTCGTTGTATAAGTTTGATATTCCCTTTCTGGTGTTCAATGAACTTCTCAATCTCAAATTGTCTGGCAAGATGAAGTCTTTTCAGCTAGCCANCGAGTCTGCTCCCCTTTCCTTAACTCCTAAATTCATCCTCCCAGAAGATAAAAGACCACAACTTTCAGAGGCTACTTTAGCCTCAATACCCATAATTGATTTGAGTGAAGACAACCCTTCACCCTCTTTGGTGGTTCAGAAGATATCACAAGCCTGTGAGGAGCATGGGTTTTTTCAGATTGTGAACCATGGTGTTCCTGAGAATGTTTGCAACAAAATGGTGGCTGCAATCACTGACCTTTTTGATTTGCCACCAGAGCAAAGAGGACAACTCTCCTCAACAGATCCTGCCAAGAATGTAAAATTTTACAATTATCACCTTCAGGTGGAAGGTGGAGAACAGGTGAAGATGTGGAGTGAAAGCTTCACTCATTCCTGGTATCCTATTGATGATGTCNTCCATCTTCTGCCTGAAAAAATTGGGACTCAGTACGGTGAGGCTTTCACCGAATATGCAAGGGAGATTGGTTCATTGGTGAGAAGGCTCTTGAGTTTGATATCTATAGGGCTTGGCTTAGAAGAGGATTGCTTGCTAAAGATACTGGGTGACCAGCCTAGACTAAGAGCACATACAAATTTCTATCCACCATGTCCAGACCCAGAGATGACACTTGGTCTCCCTGCTCATACTGATTTAAATGCTCTCACTGTCCTCTTGCAATCAGGAGCTTCTGGTCTCCAAGTGAGCAAAGATGGGAAATGGATTGATGTTCCTNCTATTCCCAATGCTTTTATTGTGAACCATGGTGTTCCTCAGCAGGTTTGCAACAAAATGGTGGCTGCAATCACTGACCTTTTTGACTTGCCACCAGAGCAAAGGGGACAACTCTTCTCAACAGCTCCTGCCAAGAATGTAAAATTTTACAATTATCACCTTCAGGTGGAAGGTGGAGAAAAGGTGAAGAAGTGGAGTGAAAGCTTCACTCATTCCTGGTATCCTATTGATGATGTCATCCATCTTCTGCCTGAAAAAATTGGGACTCAGTACGGTGAGGCTTTCACCGAATATGCAAGGGAGATTGGTTCATTGGTGAGAAGGCTCTTGAGTTTGATATCTGTAGGGCTTGGCTTAGAAGAGGATTGCTTGCTAAAGATACTGGGTGACCAGCCTAGACTAAGAGCACATACAAATTTCTATCCACCATGTCCAGACCCAGAGATGACACTTGGTCTCCCTGCTCATACTGTTTTAAATGCTCTCACTGTCCTCTTGCAATCAGGAGCTTCTGGTCTCCAAGTGAGCAAAGATGGGAAATGGATTGATGTTCCTCCTATTCCCGATGCTTTTGTGATCAATCTAGGAGATCAAATTCAGGTTCTGAGCAATGGAAGATTCAAAAGCGTGCTTCACAGGGCTGTTAACAACAATGTGCATCCACGGGTGTCGATGGCTATGTTTTATGGGCCAAACACGGACACTATAATAGGCCCCATTAAGGACTTGATAGATGAGGAACATCCTTCTAGGTACCGAAATTATCGCTTCTCTGAGTTTCTTGAAGAATTCTACAAACAAGAAGGTACAAGGAGAATGGTGAAGGAAGTGTTCTACTTGCCATATTAGAACATAAAGAATGTTGTGTTTTCAAATGATTATTATTGCATAAGGGCCATNATTAAATAAATGATGTGTTCACAAATGTCACTACTACTGTTTTCACTTTTCATTGTTGAGCCATTGAAAGGCCATATCTATGAACTGGGATCTATGAAATTATGGAATTAGTCACAAGGCTTTGTTTGGAGGGGAGGCCGGGAGGGGAGGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02155	28717	32513	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002155s00036298.1	PF14226.1	DIOX_N	63	163	1.30E-22
Glyur002155s00036298.1	PF03171.15	2OG-FeII_Oxy	225	284	7.50E-12
Glyur002155s00036298.1	PF14226.1	DIOX_N	279	347	6.50E-08
Glyur002155s00036298.1	PF03171.15	2OG-FeII_Oxy	410	503	1.90E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.674
SRR1783600	control	10.009
SRR1783602	moderate drought stress	15.344
SRR1811619	moderate drought stress	14.879

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.573
DRR006520	Root Summer glycyrrhizin high producing strain	18.872
DRR006521	Root Winter glycyrrhizin high producing strain	7.877
DRR006522	Root Winter glycyrrhizin high producing strain	7.350
DRR006523	Root Summer glycyrrhizin low producing strain	5.609
DRR006524	Root Summer glycyrrhizin low producing strain	5.605
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.313
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.499

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.974
SRR2868004	Drought Stress (root)	16.727
SRR2967015	Control (root)	11.816

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.017
SRR9715740	Leaf	0.630
SRR9715741	Leaf	1.134
SRR9715739	Root	4.107
SRR9715742	Root	2.808
SRR9715743	Root	2.545

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.578
SRR8749028	MeJA induced 9h	2.371
SRR8749029	MeJA induced 9h	1.384
SRR8749030	Uninduced	3.431
SRR8749031	Uninduced	1.404
SRR8749032	Uninduced	0.939

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.955
SRR8400027	Control - Root	8.797