Gene detail

Gene detail information of Glyur002155s00036297

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12970.1	1.00E-106	plant intracellular ras group-related LRR 3
NR	XP_003517711.1	0	PREDICTED: plant intracellular Ras-group-related LRR protein 3-like [Glycine max]
COG	YP_007146276.1	4.00E-30	Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q8W4Q3\|PIRL3_ARATH	4.00E-133	Plant intracellular Ras-group-related LRR protein 3
trEMBL	tr\|I1J534\|I1J534_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G03130.1}

Sequence

Transcript Sequence

>Glyur002155s00036297.1
AAAAAAATGACTTCTTCCTACTTGACCAAAAAAAAAAAAGACTTCTTCCTACTTTTCCCTCCTCGCCACACTTCGCTTTTCTTCCTCCTTCTGGCACAAAAATGGATCCCAACCCCAACGATTTCCCCCTTCTCTGTTACCTCTTAAACCAGCTAGATCCCCACACCTACTCACCTCTACCAAAAGAGCTTCATCAACCTCTACTAACCCAGTTTCCTCATTTGAACCACCCCAAAGTGCTACCCTCACTGACCACTCTCTTGCCCGAGCTCAACATCACCAACACCTTGTCCCTTCTTAGCACCATCGGTCCTCGCCCTGACCCTTCTGCGCTCGCCACTTCTCGTGCCAAGATCGCCGAACCCCATGTCGACGACGACGTCGTTCAGGTGTATCAGGCCNTGTTGAGAGTTGAAGAGATGCNCGTGGAGTGTGCCAAGCAGCTGAAGGCTGCGGAGGAGAGGGTTGTCGAGGCTTATGAATCGTGCGTGGCGCAATCGGTGAAAGGGGATGAGGAGGAGGGGGTGAATGAACGTGTTGTTGGGATATTGAGAAAAGCTGAGGTTGAGCAAGTGGAGAAGGTTGATCTCTCTGGGCTTCAGTTAAGGATTCTTCCTGATGCATTTGGAAAGATTCATGGCCTTGTTGTGCTTAATTTGTCTAGTAATCAGTTAGAGGCGATTCCTGATTCAATAGCAGGACTACAAAAGCTTGTGGAGCTTGACGTTTCGTCACTAGTTGAANTAGATGCAAGCTTTAACAACTTAATGTGTCTGCCAACAAACNTGGGCTATGGACTCGTTAACCTTGAGAAGCTCTCGATCCATTTGAACAAGATACGGTTTCTTCCCCCATCCATTGGAGAAATGNGATCTCTCAGATACCTCGATGTTCNTTTCAATGAGCTTCATGGCCTACCTCACACTATTGGGAAGCTAACAAATCTTGAATATCTAAACATTAGCAGTAATTTCAATGATATGACAGGGCTTCCTGAAACAGTTAGTGATCTAGTTAACTTACAGGAGCTTGACCTCAGCAACAACCAGATCCGGGCTCTTCCTTACACGTTCGGGAGGCTCGAGAAATTAACGAAGCTCAACCTGGACCAGAATCCTATCATTGTTCCTCCATTAGAGGTTGTGAATCAAGGGGTTGAGGCTGTCAAGGAGTACATGGCCAAGCGGTGGCTTGAACTCATTGAAGAAGAACAACAGAAAAACATGGTTGAAACACAAAATCCGCAAGCACAAACAGGATGGCTGGCGTGGGGAGCCTCATTGTTGAATAATGTTGCTGGGGTTTCTGNAAGTGTTGCAGAATATTTTGGTGCTAGAAAAGCTCCAAGAGACCCATGGTTGGATCAACAGCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02155	24293	26878	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002155s00036297.1	PF13855.1	LRR_8	157	211	1.10E-07
Glyur002155s00036297.1	PF13855.1	LRR_8	258	317	2.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	66.870
SRR1783600	control	66.974
SRR1783602	moderate drought stress	64.727
SRR1811619	moderate drought stress	64.803

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	62.931
DRR006520	Root Summer glycyrrhizin high producing strain	62.857
DRR006521	Root Winter glycyrrhizin high producing strain	121.485
DRR006522	Root Winter glycyrrhizin high producing strain	118.917
DRR006523	Root Summer glycyrrhizin low producing strain	79.964
DRR006524	Root Summer glycyrrhizin low producing strain	80.705
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.728
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.066

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.972
SRR2868004	Drought Stress (root)	37.859
SRR2967015	Control (root)	46.088

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.577
SRR9715740	Leaf	16.813
SRR9715741	Leaf	20.559
SRR9715739	Root	57.318
SRR9715742	Root	53.274
SRR9715743	Root	49.620

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.060
SRR8749028	MeJA induced 9h	56.200
SRR8749029	MeJA induced 9h	50.275
SRR8749030	Uninduced	24.202
SRR8749031	Uninduced	27.547
SRR8749032	Uninduced	22.262

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.202
SRR8400027	Control - Root	59.356