Gene detail

Gene detail information of Glyur002152s00044289

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19850.1	1.00E-124	Phototropic-responsive NPH3 family protein
NR	XP_003533683.1	0	PREDICTED: BTB/POZ domain-containing protein At3g19850-like [Glycine max]
Swissprot	tr\|Q9LT24\|Y3985_ARATH	1.00E-152	BTB/POZ domain-containing protein At3g19850
trEMBL	tr\|I1L768\|I1L768_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G41760.1}

Sequence

Transcript Sequence

>Glyur002152s00044289.1
ATGAAGAACCATCTTCTCCGGGATAGGGTAAGATTTTCATACTTGGCCACACAAGCAGTAGCTATGCAGAAGCTCTGTGACTTGCAAATCCTCATTAATGATGAGGAAACATTCCTTTTAAACGAGAAGTTTATATCAAGATACTGTGGAACAATGAAGAAAATGTTGGATCATGAAAAGAGAAGAATTGAAATCAATGATTTCCCTGGAGGGCCAGATGGGTTTGAGCTGGTTTTGAGATTCTGTTACAACCAAGGCAGAATCCCAATCACTGTTTCCAATGTTCTTATTCTCCACTGTTGTGCACTTTATCTTGGAATGACTGAGGAGTTCTTCAGCAACAATCTCTTGCAACAAACACAAACCTTTCTTGATGGAATCTATCGCTGGACATGGAATGAAACACTTGCAAGTCTCAAGAGTTGTGCTTGTGAGCTGTTTTATGCATATGCAGATAGCTATTGTCTTTTGGATAAGATCATTTGCGCACTCTTAGCAAAGATGGGTCAAAACTCTGATTCAAACCTCACAGCTTCTTCATCTTCATCATCCCCATCTTCTCATGAAAGCAATTTTGCCAAGAGACTCTCTTCTTCAACCCAAGTTACTACTCCGAAGTCAACTTTGCAAAGCAAAGCATGGTGGTTTGAGGATTTGGCTACTTTACCCCGAAAGATCATTGAGAAACTTCTTCAGGGCATTGGAGCTTACAAAAAAGAGAACAACAATTTAATTCTCACAAGGTTTCTGCTTCATTATCTGAAAACAGTGACCCCAACAAGAGAGGTTATTAGTTGCAAAAAAATTAGTGAGTATGCTGGTCTTGCAGAAACAGCTGCTTATGGGGTCATATTTGTTGGTCACAATACTTTTTCTTGCAGAGGTCTTTTTTGGGTACTAAGGATTGTATCTAAATTTGGGTTAAGTAGAAATTGTAGAATAGAAATGGAGAAATTGATTGGTGGGGTGCTTGAGCAAGCAACTTTGGATGATCTTCTTGTCTCTGGNAATTACATGGGACTTCATTATGATGTTGCTTTTGTGATAAGATTGGTTAAACTATTTGTTGACACCAATGGCTGTGATGTTCAGAAACTGAGAAAAGTTGGTAGGCTAATTGACAAGTATTTGACAGAGATATCCCCTGATCAGAACCTCAAGATCTCTAAATTCCTAGCAGTTGCAGAATGTTTACCCGACTCTGCAAGGGATTGCTTTGATGGGGTCTATAGAGCCATTGACATCTATCTTGAGTCTCATCCAATGATTGCATTTGAGGAGAGGTCAAGATTGTGTAGATGTCTTAATTACAATAAACTCAGCTTTGAAGCTTGTAAAGATCTTGCTAAGAACCCCAGAATACCTCCAAGGATTGCAATGCAGGCTCTTATTTCTCAAAAGAGAAATATTCAATCATGTGAGTTTGCCATTGGCGAAAGTGGAATCATGAGCCCTTCCCAAATCATTTTGTACTATGAAGAGGACAACAACACAGACAACTTCTTGGAAGAGAAACAAGATGTGAGAGTGAACCTAGAGAGCATGCAGTGGAGAGTAAGCGAATTGGAGAAATTATGCAGGGAAATGAAGGTTCAGATGTCAAGGTTCACTGGCCATAATGTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02152	9533	12118	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002152s00044289.1	PF03000.9	NPH3	213	445	5.10E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.457
SRR1783600	control	3.434
SRR1783602	moderate drought stress	2.197
SRR1811619	moderate drought stress	2.149

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.468
DRR006520	Root Summer glycyrrhizin high producing strain	1.498
DRR006521	Root Winter glycyrrhizin high producing strain	0.205
DRR006522	Root Winter glycyrrhizin high producing strain	0.199
DRR006523	Root Summer glycyrrhizin low producing strain	0.202
DRR006524	Root Summer glycyrrhizin low producing strain	0.271
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.342
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.300

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.606
SRR2868004	Drought Stress (root)	5.044
SRR2967015	Control (root)	3.239

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.055
SRR9715740	Leaf	0.500
SRR9715741	Leaf	1.507
SRR9715739	Root	1.104
SRR9715742	Root	0.723
SRR9715743	Root	1.585

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.112
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.649
SRR8400027	Control - Root	2.270