Gene detail information of Glyur002150s00039309 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19410.1 | 0 | ABC-2 type transporter family protein |
| NR | XP_003556918.1 | 0 | PREDICTED: ABC transporter G family member 23-like [Glycine max] |
| COG | YP_001302825.1 | 5.00E-32 | multidrug ABC transporter ATPase [Parabacteroides distasonis ATCC 8503] |
| Swissprot | tr|Q3E9B8|AB23G_ARATH | 0 | ABC transporter G family member 23 |
| trEMBL | tr|K7N1E9|K7N1E9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G08010.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02150 | 1065 | 3008 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002150s00039309.1 | PF00005.22 | ABC_tran | 88 | 241 | 3.50E-26 |
| Glyur002150s00039309.1 | PF01061.19 | ABC2_membrane | 372 | 580 | 1.20E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.361 |
| SRR1783600 | control | 4.404 |
| SRR1783602 | moderate drought stress | 5.497 |
| SRR1811619 | moderate drought stress | 5.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.103 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.120 |
| SRR2868004 | Drought Stress (root) | 4.249 |
| SRR2967015 | Control (root) | 3.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.015 |
| SRR9715740 | Leaf | 0.100 |
| SRR9715741 | Leaf | 0.124 |
| SRR9715739 | Root | 2.970 |
| SRR9715742 | Root | 1.486 |
| SRR9715743 | Root | 1.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.017 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.114 |
| SRR8749031 | Uninduced | 0.046 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.290 |
| SRR8400027 | Control - Root | 15.226 |