Gene detail information of Glyur002147s00034579 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55050.1 | 1.00E-61 | GDSL-like Lipase/Acylhydrolase superfamily protein |
| NR | XP_003600129.1 | 1.37E-162 | GDSL esterase/lipase [Medicago truncatula] |
| COG | YP_436892.1 | 3.00E-07 | phospholipase/lecithinase/hemolysin [Hahella chejuensis KCTC 2396] |
| Swissprot | tr|Q9FIA1|GDL87_ARATH | 8.00E-75 | GDSL esterase/lipase At5g55050 (Precursor) |
| trEMBL | tr|G7IY38|G7IY38_MEDTR | 5.00E-163 | GDSL-like lipase/acylhydrolase {ECO:0000313|EMBL:AES70380.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02147 | 43519 | 45171 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002147s00034579.1 | PF00657.17 | Lipase_GDSL | 33 | 285 | 5.20E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.186 |
| SRR1783600 | control | 0.124 |
| SRR1783602 | moderate drought stress | 0.225 |
| SRR1811619 | moderate drought stress | 0.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.469 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.322 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.801 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.083 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.876 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.775 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.643 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.719 |
| SRR2868004 | Drought Stress (root) | 0.799 |
| SRR2967015 | Control (root) | 0.637 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.152 |
| SRR9715740 | Leaf | 0.178 |
| SRR9715741 | Leaf | 0.167 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.033 |
| SRR9715743 | Root | 0.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.038 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.051 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.362 |
| SRR8400027 | Control - Root | 0.179 |