Gene detail information of Glyur002147s00034578 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48910.1 | 4.00E-63 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004500093.1 | 3.09E-150 | PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FI80|PP425_ARATH | 3.00E-79 | Pentatricopeptide repeat-containing protein At5g48910 |
| trEMBL | tr|V7AUW8|V7AUW8_PHAVU | 2.00E-146 | Uncharacterized protein {ECO:0000313|EMBL:ESW09374.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02147 | 40486 | 41634 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002147s00034578.1 | PF01535.15 | PPR | 2 | 21 | 0.073 |
| Glyur002147s00034578.1 | PF14432.1 | DYW_deaminase | 132 | 249 | 2.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.347 |
| SRR1783600 | control | 0.343 |
| SRR1783602 | moderate drought stress | 1.256 |
| SRR1811619 | moderate drought stress | 1.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.529 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.589 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.954 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.088 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.129 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.947 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.545 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.988 |
| SRR2868004 | Drought Stress (root) | 1.461 |
| SRR2967015 | Control (root) | 0.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.385 |
| SRR9715740 | Leaf | 0.568 |
| SRR9715741 | Leaf | 0.311 |
| SRR9715739 | Root | 0.258 |
| SRR9715742 | Root | 0.457 |
| SRR9715743 | Root | 0.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.981 |
| SRR8749028 | MeJA induced 9h | 7.270 |
| SRR8749029 | MeJA induced 9h | 3.214 |
| SRR8749030 | Uninduced | 3.435 |
| SRR8749031 | Uninduced | 3.920 |
| SRR8749032 | Uninduced | 6.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.194 |
| SRR8400027 | Control - Root | 1.277 |